diff --git a/docs/gorules_test_errors.gaf b/docs/gorules_test_errors.gaf index 177e81ae..0c23e010 100644 --- a/docs/gorules_test_errors.gaf +++ b/docs/gorules_test_errors.gaf @@ -16,13 +16,13 @@ PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S0000015 PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-2 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(x) ! FAILS GORULE:0000001 - TEST 3 - (see also GORULE:0000058) bad extension filler: space in ID PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-3 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(X:9 X:8) -"! FAILS GORULE:0000001 - TEST 4 - (see also GORULE:0000058) bad extension filler: space in ID, with an additional valid expression" +! FAILS GORULE:0000001 - TEST 4 - (see also GORULE:0000058) bad extension filler: space in ID, with an additional valid expression PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-4 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase "part_of(X:9 X:8),part_of(X:1)" ! FAILS GORULE:0000001 - TEST 5 - Bad evidence code PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 MADEUP SGD:S000001583 C GORULE:0000001-5 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase part_of(X:1) -"! FAILS GORULE:0000001 - TEST 6 - Bad date, but fixable" +! FAILS GORULE:0000001 - TEST 6 - Bad date, but fixable PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-6 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 3/5/15 PomBase part_of(X:1) -"! FAILS GORULE:0000001 - TEST 7 - Bad date, unparsable" +! FAILS GORULE:0000001 - TEST 7 - Bad date, unparsable PomBase SPAC25B8.17 ypf1 is_active_in GO:0005634 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-7 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 TODAY PomBase part_of(X:1) ! FAILS GORULE:0000001 - TEST 8 - invalid taxon 0 ZFIN ZDB-GENE-070117-1552 obj_symbol acts_upstream_of_or_within GO:0045601 PMID:17531218 IMP ZFIN:ZDB-GENO-080318-17 P GORULE:0000001-8 gene_product taxon:0 20080326 PomBase @@ -36,19 +36,19 @@ PomBase SPAC25B8.17 ypf1 is_active_in BAD_GO_ID GO_REF:0000024 ISO SGD:S00000158 PomBase SPAC25B8.18 ypf2 is_active_in GO0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-12 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase ! FAILS GORULE:0000001 - TEST 13 - bad GO ID syntax; bad namespace PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000001-13 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 PomBase -"! FAILS GORULE:0000001 - test 14 - 'acts_upstream_of,_positive_effect' is not a valid relation (should not contain a comma)" +! FAILS GORULE:0000001 - test 14 - 'acts_upstream_of,_positive_effect' is not a valid relation (should not contain a comma) UniProtKB A1B2F4 aztD "acts_upstream_of,_positive_effect" GO:0005634 PMID:26468286 IDA C GORULE:0000001-14 protein taxon:318586 20230427 PomBase ! FAILS GORULE:0000001 - test 15 - 'acts_upstream_of_positive_effect' is not a valid relation (should not contain a comma) UniProtKB A1B2F4 aztD acts_upstream_of_positive_effect GO:0005634 PMID:26468286 IDA C GORULE:0000001-15 protein taxon:318586 20230427 PomBase -"! FAILS GORULE:0000001 - test 16 - 'acts_upstream_of_or_within,_positive_effect' is not a valid relation (should not contain a comma)" +! FAILS GORULE:0000001 - test 16 - 'acts_upstream_of_or_within,_positive_effect' is not a valid relation (should not contain a comma) UniProtKB A1B2F4 aztD "acts_upstream_of_or_within,_positive_effect" GO:0005634 PMID:26468286 IDA C GORULE:0000001-16 protein taxon:318586 20230427 PomBase -"! FAILS GORULE:0000001 - test 17 - 'acts_upstream_of_or_within,_negative_effect' is not a valid relation (should not contain a comma)" +! FAILS GORULE:0000001 - test 17 - 'acts_upstream_of_or_within,_negative_effect' is not a valid relation (should not contain a comma) UniProtKB A1B2F4 aztD "acts_upstream_of_or_within,_negative_effect" GO:0005634 PMID:26468286 IDA C GORULE:0000001-17 protein taxon:318586 20230427 PomBase ! FAILS GORULE:0000002 - TEST 1 - has a 'NOT' annotations to 'protein binding ; GO:0005515 UniProtKB O76187 darA NOT|enables GO:0005515 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-1 Darlin darA protein taxon:44689 20100205 GO_Central ! FAILS GORULE:0000002 - TEST 2 - has a 'NOT' annotations to 'binding ; GO:0005515 UniProtKB O76187 darA NOT|enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-2 Darlin darA protein taxon:44689 20100205 GO_Central -"! PASSES GORULE:0000003 - TEST 3 - has a 'NOT' annotations to GO:0005509, a child of 'binding ; GO:0005515" +! PASSES GORULE:0000003 - TEST 3 - has a 'NOT' annotations to GO:0005509, a child of 'binding ; GO:0005515 UniProtKB O76187 darA NOT|enables GO:0005509 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000002-3-PASS Darlin darA protein taxon:44689 20100205 GO_Central ! TBC FAILS GORULE:0000005 - TEST 1 - incorrect evidence codes for 'protein binding ; GO:0005515' - ISS not allowed UniProtKB O76187 darA enables GO:0005515 PMID:9802899 ISS UniProtKB:P34149 F GORULE:0000005-1 Darlin darA protein taxon:44689 20100205 GO_Central @@ -62,11 +62,11 @@ GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 IEP F GORULE:0000006 GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 HEP F GORULE:0000006-2 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central ! FAILS GORULE:0000006 - TEST 3 - fails because uses IEP with a cellular component term. GeneDB PF3D7_0507500 SUB1 enables GO:0005634 PMID:12764150 IEP C GORULE:0000006-3 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central -"! SHOULD PASS GORULE:0000006 - TEST 4 - passes because uses assigned_by is GOC, even if there is an IEP with a molecular function term." +! SHOULD PASS GORULE:0000006 - TEST 4 - passes because uses assigned_by is GOC, even if there is an IEP with a molecular function term. GeneDB PF3D7_0507500 SUB1 enables GO:0004672 PMID:12764150 IEP F GORULE:0000006-4 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GOC ! SHOULD PASS GORULE:0000006 - TEST 5 - should pass because obsolete BP term should be isgnored; GO:1901011 obsolete (S)-reticuline catabolic process GeneDB PF3D7_0507500 SUB1 enables GO:1901011 PMID:12764150 IEP C GORULE:0000006-5 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central -"! SHOULD PASS GORULE:0000006 - TEST 6 - should pass because alt_ids should be ignored, and GO:0006758 is an alt_id to GO:0006754 ATP biosynthetic process" +! SHOULD PASS GORULE:0000006 - TEST 6 - should pass because alt_ids should be ignored, and GO:0006758 is an alt_id to GO:0006754 ATP biosynthetic process GeneDB PF3D7_0507500 SUB1 enables GO:0006758 PMID:12764150 IEP C GORULE:0000006-6 subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GO_Central ! FAILS GORULE:0000007 IPI used with GO:0003824 catalytic activity or descendents (GO:0004674 protein serine/threonine kinase activity) UniProtKB A0A078CGE6 M3KE1 enables GO:0004674 PMID:11489177 IPI F GORULE:0000007-1 protein taxon:3708 20150115 GO_Central @@ -76,42 +76,42 @@ UniProtKB Q9DGE2 mapk14a is_active_in GO:0005622 PMID:10995439 IDA C GORULE:000 UniProtKB Q9WVH3 Foxo4 involved_in GO:0007049 PMID:12048180 IDA P GORULE:0000008-2 Forkhead box protein O4 Foxo4|Afx|Afx1 protein taxon:10090 20110425 GO_Central ! FAILS GORULE:0000008 - TEST 3 - also fails GORULE:0000051 - GO:0005488 is in the subset gocheck_do_not_manually_annotate UniProtKB O76187 darA enables GO:0005488 PMID:9802899 IPI UniProtKB:P34149 F GORULE:0000008-3 Darlin darA protein taxon:44689 20100205 GO_Central -"! FAILS GORULE:0000011 - TEST 1 - because the GO ID is not one of GO:0003674, GO:0008150 or GO:0005575" +! FAILS GORULE:0000011 - TEST 1 - because the GO ID is not one of GO:0003674, GO:0008150 or GO:0005575 UniProtKB Q4KA26 PFL_3807 is_active_in GO:0016020 GO_REF:0000015 ND C GORULE:0000011-1 Putative membrane protein PFL_3807 protein taxon:220664 20090717 GO_Central -"! FAILS GORULE:0000011 - TEST 2 - fails because the evidence code is not ND, even if the GO ID one of GO:0003674, GO:0008150 or GO:0005575." +! FAILS GORULE:0000011 - TEST 2 - fails because the evidence code is not ND, even if the GO ID one of GO:0003674, GO:0008150 or GO:0005575. UniProtKB Q4KA26 PFL_3807 is_active_in GO:0005575 GO_REF:0000015 IDA C GORULE:0000011-2 Putative membrane protein PFL_3807 protein taxon:220664 20090717 GO_Central ! SHOULD PASS GORULE:0000011 - TEST 3 UniProtKB Q6UW15 REG3G involved_in GO:0050689 PMID:16931762 IDA P GORULE:0000011-3 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606|taxon:1334565 20220606 GO_Central ! FAILS GORULE:0000013 - fails because GO:0075342 should not be annotated for human gene products - cannot be tested in ontobio parser (not a line-by-line check) UniProtKB P67870 CSNK2B involved_in GO:0075342 PMID:20719947 IDA P GORULE:0000013-1 Casein kinase II subunit beta CSNK2B|CK2N|G5A protein taxon:9606 20230307 GO_Central -"! FAILS GORULE:0000015 - TEST 1 - GO:0005886 plasma membrane is not a child of ""GO:0018995 host cellular component""" +! FAILS GORULE:0000015 - TEST 1 - GO:0005886 plasma membrane is not a child of "GO:0018995 host cellular component" UniProtKB O56786 hol187 is_active_in GO:0005886 PMID:10419939 IDA C GORULE:0000015-1 Holin protein Hol187 hol187 protein taxon:55511|taxon:9696 20170423 GO_Central -"! FAILS GORULE:0000015 - TEST 2 - ""neutrophil chemotaxis"" is not a child of ""GO:0044419 interspecies interaction between organisms""" +! FAILS GORULE:0000015 - TEST 2 - "neutrophil chemotaxis" is not a child of "GO:0044419 interspecies interaction between organisms" UniProtKB A0A0K2S4Q6 CD300H involved_in GO:0030593 PMID:26221034 IDA P GORULE:0000015-2 Protein CD300H CD300H protein taxon:9606|taxon:55511 20160428 GO_Central ! FAILS GORULE:0000015 - TEST 3 - same taxon in Column 13 for GO:0044158 host cell wall UniProtKB O56786 hol187 is_active_in GO:0018995 PMID:10419939 IDA C GORULE:0000015-3 Holin protein Hol187 hol187 protein taxon:9606|taxon:9606 20170423 GO_Central ! SHOULD PASS GORULE:0000015 - TEST 4 - GO:0010363 regulation of plant-type hypersensitive response is_ GO:0043903 regulation of biological process involved in symbiotic interaction UniProtKB Q6UW15 REG3G involved_in O:0010363 PMID:16931762 IDA P GORULE:0000015-4 Regenerating islet-derived protein 3-gamma REG3G|PAP1B|UNQ429/PRO162 protein taxon:9606|taxon:1334565 20220606 GO_Central ! FAILS GORULE:0000016 - TEST 1 - column 8 (with/from) is null -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC P GORULE:0000016-1 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC P GORULE:0000016-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000016 - TEST 2 - column 8 (with/from) is has a non-GOID -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC UBERON:0002048 P GORULE:0000016-2 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC UBERON:0002048 P GORULE:0000016-2 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000016 - TEST 3 - column 8 (with/from) is the same GOID as column 5 -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:0006921 P GORULE:0000016-3 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:0006921 P GORULE:0000016-3 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! SHOULD PASS GORULE:0000016 - TEST 5 - column 8 (with/from) is has a valid GO ID -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:009718 P GORULE:0000016-5 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IC GO:009718 P GORULE:0000016-5 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000017 - TEST 1 - IDA annotations must not have a with/from entry (column 8) -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IDA GO:0004198|GO:0008092 P GORULE:0000017-1 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 GO_REF:0000036 IDA GO:0004198|GO:0008092 P GORULE:0000017-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000018 - TEST 1 - column 8 (with/from) is null for IPI annotation to 'protein binding ; GO:0005515' -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-1 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-1 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 GO_Central ! FAILS GORULE:0000018 - TEST 2 - missing Column 8 data ('with' field) for 'binding ; GO:0005488' -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-2 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IPI F GORULE:0000018-2 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 GO_Central ! FAILS GORULE:0000018 - TEST 3 - missing Column 8 data ('with' field) for 'binding ; GO:0005488' UniProtKB O76187 darA involved_in GO:0005488 PMID:9802899 IPI F GORULE:0000018-3 protein taxon:44689 20230513 GO_Central ! FAILS GORULE:0000020 - TEST 1 - obsolete term with no replacement UniProtKB P04995 sbcB involved_in GO:0090503 GO_REF:0000108 IEA GO:0000175 P GORULE:0000020-1 Exodeoxyribonuclease I sbcB|cpeA|xonA|JW1993|b2011 protein taxon:83333 20230509 GO_Central ! FAILS GORULE:0000020 - TEST 2 - obsolete term with a replacement term -TriTrypDB Tb11.02.5420b Tb11.02.5420b located_in GO:0016021 GO_REF:0000002 ISO GeneDB:Tb11.02.5420 C "GORULE:0000020-2 NADPH-cytochrome p450 reductase, putative" mRNA taxon:185431 20130726 GO_Central +TriTrypDB Tb11.02.5420b Tb11.02.5420b located_in GO:0016021 GO_REF:0000002 ISO GeneDB:Tb11.02.5420 C GORULE:0000020-2 NADPH-cytochrome p450 reductase, putative mRNA taxon:185431 20130726 GO_Central ! FAILS GORULE:0000020 - TEST 3 - obsolete term in 'with' (column 8) with no replacement MGI:1100518 Smad7 bla involved_in GO:0017015 MGI:MGI:3836072|PMID:18952608 IC GO:0060389 P GORULE:0000020-3 SMAD protein_coding_gene taxon:10090 20090211 GO_Central ! FAILS GORULE:0000020 - TEST 4 - obsolete term in 'extension' (column 16) with no replacement @@ -125,25 +125,25 @@ PomBase SPAC25B8.18 ypf2 is_active_in GO0006921 GO_REF:0000024 ISO SGD:S00000158 ! FAILS GORULE:0000027 - TEST 3 - bad GO ID syntax; bad namespace PomBase SPAC25B8.19 ypf3 is_active_in RO:0006921 GO_REF:0000024 ISO SGD:S000001583 C GORULE:0000027-3 intramembrane aspartyl protease of the perinuclear ER membrane Ypf1 (predicted) ppp81 protein taxon:4896 20150305 GO_Central ! FAILS GORULE:0000027 - TEST 4 - Prefix not in /db-xrefs.yaml -UniPotKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-4 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniPotKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-4 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000027 - TEST 5 - Assigned_by not in /groups.yaml -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-5 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 SGDDB +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA P GORULE:0000027-5 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 SGDDB ! FAILS GORULE:0000027 - TEST 6 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:PMID:14561399 IDA P GORULE:0000027-6 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:PMID:14561399 IDA P GORULE:0000027-6 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000027 - TEST 7 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:unpublished IDA P GORULE:0000027-7 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:unpublished IDA P GORULE:0000027-7 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000027 - TEST 8 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID: IDA P GORULE:0000027-8 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID: IDA P GORULE:0000027-8 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central ! FAILS GORULE:0000027 - TEST 9 - Bad reference format -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:0. IDA P GORULE:0000027-9 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central -"! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P" -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA C GORULE:0000028-1 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central -"! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P" -UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA F GORULE:0000028-2 Calpain-10 "CAPN10,KIAA1845" protein taxon:9606 20140213 GO_Central -"! FAILS GORULE:0000028 - TEST 3 - Bad GO aspect, P instead of F" -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA P GORULE:0000028-3 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:0. IDA P GORULE:0000027-9 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000028 - TEST 1 - Bad GO aspect, C instead of P +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA C GORULE:0000028-1 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000028 - TEST 2 - Bad GO aspect, F instead of P +UniProtKB Q9HC96 CAPN10 involved_in GO:0006921 PMID:23072806 IDA F GORULE:0000028-2 Calpain-10 CAPN10,KIAA1845 protein taxon:9606 20140213 GO_Central +! FAILS GORULE:0000028 - TEST 3 - Bad GO aspect, P instead of F +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA P GORULE:0000028-3 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 GO_Central ! FAILS GORULE:0000028 - TEST 4 - GO aspect missing -UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA GORULE:0000028-4 Mitogen-activated protein kinase kinase kinase mlk-1 "mlk-1,K11D12.10" protein taxon:6239 20170322 GO_Central +UniProtKB A0A0K3AV08 mlk-1 enables GO:0005080 PMID:23072806 IDA GORULE:0000028-4 Mitogen-activated protein kinase kinase kinase mlk-1 mlk-1,K11D12.10 protein taxon:6239 20170322 GO_Central ! FAILS GORULE:0000029 - TEST 1 - IEA older than 1 year UniProtKB P77335 hlyE located_in GO:0020002 GO_REF:0000044 IEA UniProtKB-SubCell:SL-0375 C GORULE:0000029-1 protein taxon:83333 20220807 GO_Central ! FAILS GORULE:0000029 - TEST 2 - IEA older than 3 years @@ -160,11 +160,11 @@ UniProtKB A0A024BTL2 PHKG1 is_active_in GO:0005634 PMID:26221034 IBA FB:FBgn0019 ComplexPortal CPX-102 dapk-calm_human part_of GO:0032991 PMID:10629061 IMP C GORULE:0000039-1 complex taxon:9606 20200218 GO_Central ! FAILS GORULE:0000039 TEST 2 - Protein complex annotated to an is_a descendant of GO:0032991 protein-containing complex ComplexPortal CPX-102 dapk-calm_human part_of GO:0043020 PMID:10629061 IMP C GORULE:0000039-2 complex taxon:9606 20200218 GO_Central -"! FAILS GORULE:0000042 - TEST 1 - IKR evidence, no negation (NOT) in column 4" +! FAILS GORULE:0000042 - TEST 1 - IKR evidence, no negation (NOT) in column 4 UniProtKB A0A0B4JCV5 CG9898 enables GO:0004252 PMID:30367934 IKR F GORULE:0000042-1 protein taxon:7227 20190311 GO_Central -"! FAILS GORULE:0000046 - TEST 1 - self-binding’ term, no data in Column 8 " +! FAILS GORULE:0000046 - TEST 1 - self-binding’ term, no data in Column 8 UniProtKB A4D126 CRPPA enables GO:0042803 PMID:26687144 IDA F GORULE:0000046-1 protein taxon:9606 20170627 GO_Central -"! FAILS GORULE:0000046 - TEST 2 - self-binding’ term, annotated to a protein other than 'self'" +! FAILS GORULE:0000046 - TEST 2 - self-binding’ term, annotated to a protein other than 'self' UniProtKB A4D126 CRPPA enables GO:0042803 PMID:26687144 IDA UniProtKB:P35555 F GORULE:0000046-2 protein taxon:9606 20170627 GO_Central ! FAILS GORULE:0000050 - TEST 1 - self-referential ISS annotations UniProtKB F1N2N9 ODAD1 part_of GO:0120228 PMID:34715025 ISS UniProtKB:F1N2N9 C GORULE:0000050-1 Outer dynein arm-docking complex subunit 1 ODAD1|CCDC114 protein taxon:9913 20220422 GO_Central @@ -266,7 +266,7 @@ UniProtKB A1B2F4 aztD part_of GO:0009504 PMID:26468286 IDA C GORULE:0000061-41 UniProtKB A1B2F4 aztD part_of GO:0110165 PMID:26468286 IDA C GORULE:0000061-42 protein taxon:318586 20230427 GO_Central ! FAILS GORULE:0000061 - test 43 - 'part_of' is not allowed for GO CC virion component UniProtKB A1B2F4 aztD part_of GO:0044423 PMID:26468286 IDA C GORULE:0000061-43 protein taxon:318586 20230427 GO_Central -"! FAILS GORULE:0000061 - test 44 - 'part_of' is not allowed for a GO CC icosahedral viral capsid, neck descendant of virion component " +! FAILS GORULE:0000061 - test 44 - 'part_of' is not allowed for a GO CC icosahedral viral capsid, neck descendant of virion component UniProtKB A1B2F4 aztD part_of GO:0098030 PMID:26468286 IDA C GORULE:0000061-44 protein taxon:318586 20230427 GO_Central ! SHOULD PASS GORULE:0000061 - test 45- 'enables' is allowed for a GO MF UniProtKB A1B2F4 aztD enables GO:0003909 PMID:26468286 IDA P GORULE:0000061-9 protein taxon:318586 20230427 GO_Central