diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index e43c780cb8..94f4390bd8 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -119667,15 +119667,12 @@ is_obsolete: true [Term] id: GO:0016172 -name: obsolete antifreeze activity +name: antifreeze activity namespace: molecular_function -def: "OBSOLETE. Inhibits the formation of ice crystals in organismal fluid (e.g. blood) at below freezing exogenous temperatures." [GOC:jl] -comment: This term was made obsolete because it refers to a biological process. -synonym: "antifreeze activity" EXACT [] -is_obsolete: true -consider: GO:0042309 -consider: GO:0050825 -consider: GO:0050826 +def: "Inhibits the growth and recrystallization of ice crystals, thereby lowering the freezing point of water and preventing cellular damage at subzero temperatures. This activity is observed in various cold-adapted organisms, including certain fish, insects, and plants, and contributes to survival in extreme cold environments by stabilizing supercooled liquid states." [GOC:cjm, InterPro:IPR000104] +comment: Note that this term was reinstated from obsolete. +is_a: GO:0050825 ! ice binding +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29149" xsd:anyURI [Term] id: GO:0016173 @@ -147852,14 +147849,13 @@ replaced_by: GO:0046689 [Term] id: GO:0019833 -name: obsolete ice nucleation activity +name: ice nucleation activity namespace: molecular_function -def: "OBSOLETE. Catalysis of the formation of ice crystals in extracellular fluid at relatively high temperatures (up to -2 degrees C) to protect the organism from damage by intracellular ice formation. Ice nucleation proteins function by binding an ice crystal and then encouraging it to form larger crystals. Ice nucleation is a chemical process but these proteins can positively regulate it. There are two different uses of ice nucleation proteins: bacteria secrete them extracellularly to cause a host organism's cells to freeze and die, and fish use them to protect themselves from intracellular ice formation." [GOC:ai, GOC:jl] -comment: This term was made obsolete because it represents a biological process. -synonym: "ice nucleation activity" EXACT [] -is_obsolete: true -consider: GO:0042309 -consider: GO:0050825 +def: "Catalysis of the formation of ice crystals in extracellular fluid at relatively high temperatures (up to -2 degrees Celsius) to protect the organism from damage by intracellular ice formation. This process is commonly found in certain bacteria, such as Pseudomonas syringae, and plays roles in environmental adaptation and plant pathogenesis." [GOC:cjm, PMID:35551271, UniProt:KW-0387] +comment: Note that this term was reinstated from obsolete. +xref: TC:9.B.133.1.1 +is_a: GO:0050825 ! ice binding +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29149" xsd:anyURI [Term] id: GO:0019834 @@ -317661,9 +317657,7 @@ id: GO:0050825 name: ice binding namespace: molecular_function def: "Binding to ice, water reduced to the solid state by cold temperature. It is a white or transparent colorless substance, crystalline, brittle, and viscoidal." [GOC:curators] -synonym: "antifreeze activity" RELATED [] synonym: "ice crystal binding" EXACT [] -synonym: "ice nucleation activity" RELATED [] synonym: "ice nucleation inhibitor activity" RELATED [] is_a: GO:0005488 ! binding intersection_of: GO:0036094 ! small molecule binding @@ -466441,6 +466435,19 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i created_by: rynl creation_date: 2024-09-27T05:19:27Z +[Term] +id: GO:0160219 +name: cortical endoplasmic reticulum membrane +namespace: cellular_component +def: "The lipid bilayer surrounding the cortical endoplasmic reticulum." [PMID:32735772] +is_a: GO:0005789 ! endoplasmic reticulum membrane +intersection_of: GO:0016020 ! membrane +intersection_of: bounding_layer_of GO:0032541 ! cortical endoplasmic reticulum +relationship: part_of GO:0032541 ! cortical endoplasmic reticulum +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/29159" xsd:anyURI +created_by: rynl +creation_date: 2024-11-11T23:58:54Z + [Term] id: GO:0170001 name: ergothioneine transmembrane transporter activity diff --git a/src/ontology/imports/go_taxon_constraints.owl b/src/ontology/imports/go_taxon_constraints.owl index 301630e722..e6fb0e2ad1 100644 --- a/src/ontology/imports/go_taxon_constraints.owl +++ b/src/ontology/imports/go_taxon_constraints.owl @@ -12997,6 +12997,25 @@ + + + + + + + + + + + + + + + + + + + @@ -13221,27 +13240,27 @@ - + - + - + - + PMID:12722949 - + PMID:12722949 @@ -15079,27 +15098,27 @@ - + - + - + - + PMID:11082195 - + PMID:11082195 @@ -18164,12 +18183,12 @@ - - - + + + - + @@ -18177,7 +18196,7 @@ - + @@ -18185,26 +18204,26 @@ - + - + PMID:37550452 - + PMID:37550452 - + PMID:37550452 @@ -19681,7 +19700,7 @@ - + @@ -19698,7 +19717,7 @@ - + @@ -19711,11 +19730,11 @@ - + - + @@ -19723,7 +19742,7 @@ - + @@ -19731,26 +19750,26 @@ - + - + GOC:kmv - + GOC:kmv - + GOC:kmv @@ -19951,27 +19970,27 @@ - + - + - + - + PMID:15803654 - + PMID:15803654 @@ -23271,27 +23290,27 @@ - + - + - + - + PMID:28326 - + PMID:28326 @@ -24581,27 +24600,27 @@ - + - + - + - + PMID:16535664 - + PMID:16535664 @@ -24610,27 +24629,27 @@ - + - + - + - + PMID:15073291 - + PMID:15073291 @@ -24692,27 +24711,27 @@ - + - + - + - + PMID:17400742 - + PMID:17400742 @@ -24972,21 +24991,21 @@ - - - + + - - - + + + + - + @@ -24994,7 +25013,7 @@ - + @@ -25002,11 +25021,11 @@ - + - + @@ -25014,7 +25033,7 @@ - + @@ -25022,64 +25041,64 @@ - + - + - + - + PMID:34140356 - + PMID:34140356 - + https://en.wikipedia.org/wiki/Animal_echolocation - + PMID:34140356 - + PMID:34140356 - + https://en.wikipedia.org/wiki/Animal_echolocation - + PMID:34140356 - + PMID:34140356 @@ -25380,24 +25399,24 @@ - - - - - - - - - + + + + + + + + + - + @@ -25405,7 +25424,7 @@ - + @@ -25413,7 +25432,7 @@ - + @@ -25421,7 +25440,7 @@ - + @@ -25429,7 +25448,7 @@ - + @@ -25437,7 +25456,7 @@ - + @@ -25445,7 +25464,7 @@ - + @@ -25453,7 +25472,7 @@ - + @@ -25461,92 +25480,92 @@ - + - + - + - + - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 - + PMID:21311032 @@ -27260,27 +27279,27 @@ - + - + - + - + PMID:23212898 - + PMID:23212898 @@ -30722,27 +30741,27 @@ - + - + - + - + PMID:33031395 - + PMID:33031395 @@ -34194,12 +34213,12 @@ - - - + + + - + @@ -34207,7 +34226,7 @@ - + @@ -34215,26 +34234,26 @@ - + - + PMID:18068186 - + PMID:18068186 - + PMID:18068186 @@ -35481,27 +35500,27 @@ - + - + - + - + PMID:24739148 - + PMID:24739148 @@ -35529,27 +35548,27 @@ - + - + - + - + PMID:15557260 - + PMID:15557260 @@ -35558,27 +35577,27 @@ - + - + - + - + PMID:31546611 - + PMID:31546611 @@ -38744,5 +38763,5 @@ - + diff --git a/src/taxon_constraints/only_in_taxon.ofn b/src/taxon_constraints/only_in_taxon.ofn index 0b64dec41e..da7fd926b7 100644 --- a/src/taxon_constraints/only_in_taxon.ofn +++ b/src/taxon_constraints/only_in_taxon.ofn @@ -309,6 +309,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -2494,6 +2495,11 @@ SubClassOf(Annotation( "PMI SubClassOf(Annotation( "PMID:10629216"^^xsd:string) Annotation( "PMID:14504266"^^xsd:string) ObjectSomeValuesFrom( )) SubClassOf(Annotation( "PMID:10629216"^^xsd:string) Annotation( "PMID:14504266"^^xsd:string) ObjectAllValuesFrom( )) +# Class: () + +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectAllValuesFrom( )) + # Class: () SubClassOf( ObjectSomeValuesFrom( )) diff --git a/src/taxon_constraints/only_in_taxon.tsv b/src/taxon_constraints/only_in_taxon.tsv index 4cdef17e23..22ff567400 100644 --- a/src/taxon_constraints/only_in_taxon.tsv +++ b/src/taxon_constraints/only_in_taxon.tsv @@ -925,3 +925,4 @@ GO:0018679 dibenzothiophene-5,5-dioxide monooxygenase activity NCBITaxon:Union_0 GO:0031639 plasminogen activation NCBITaxon:7742 Vertebrata GO:0009331 glycerol-3-phosphate dehydrogenase complex NCBITaxon:Union_0000004 Prokaryota GO:0160208 fibrous body-membranous organelle NCBITaxon:6231 Nematoda +GO:0019833 ice nucleation activity NCBITaxon:2 Bacteria \ No newline at end of file