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Obsoletion request: GO:1902621 actomyosin contractile ring disassembly/GO:1990274 mitotic actomyosin contractile ring disassembly #26711

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ValWood opened this issue Jan 8, 2024 · 5 comments
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@ValWood
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ValWood commented Jan 8, 2024

Please provide as much information as you can:

  • GO term ID and Label
  • GO:1902621 actomyosin contractile ring disassembly
  • GO:1990274 mitotic actomyosin contractile ring disassembly
  • GO:0120151   positive regulation of mitotic actomyosin contractile ring disassembly
  • GO:0120150 regulation of mitotic actomyosin contractile ring disassembly
  • Reason for deprecation Put an x in the appropriate box:
  • The reason for obsoletion is that the data from the paper for which the term was requested can be accurately described using another term 👍
  • GO:0000916 actomyosin contractile ring contraction
  • GO:1902404 mitotic actomyosin contractile ring contraction
  • GO:1903471 regulation of mitotic actomyosin contractile ring contraction
  • GO:1903473 positive regulation of mitotic actomyosin contractile ring contraction
  • "Replace by" term (ID and label)
    If all annotations can safely be moved to that term

  • Are there annotations to this term?

  • How many EXP: 6
    PomBase 4
    SGD 2
  • Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

No

  • Is this term in a subset? (check the AmiGO page for that term)

No

  • Any other information

Checklist for ontology editor

Check term usage and metadata in Protégé

  • check term usage in the ontology
  • check internal mappings: RHEA, EC, MetaCyc
  • check subset usage
  • check taxon constraints

Check annotations

Annotation review ticket
geneontology/go-annotation#4915

  • find external mappings (via IEAS), include in obsoletion notice

Notification

@ValWood ValWood self-assigned this Jan 8, 2024
@ValWood
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ValWood commented Jan 8, 2024

I asked some experts and they don't see any difference between constriction and disassembly. The ring disassembles as it constricts

@ValWood
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ValWood commented Jan 9, 2024

proceed to obsoletion, annotations will be remapped.

remove taxon constraint
GO:0000916 | actomyosin contractile ring contraction | Only in Taxon | 2759 | Eukaryota
(@pgaudet will I be able to do this? before xmas we were told to wait for taxon constraints until some change was implemented, otherwise I could go ahead with this)

@pgaudet
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pgaudet commented Jan 9, 2024

I think you can go ahead and remove the taxon constraint - right @balhoff ?

@balhoff
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balhoff commented Jan 9, 2024

Yes, go ahead, it's no problem.

@ValWood
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ValWood commented Jan 9, 2024

Thanks!

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