diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index df77facc91..ae6751c325 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -230069,11 +230069,14 @@ creation_date: 2011-06-22T04:09:41Z [Term] id: GO:0039519 -name: modulation by virus of host autophagy +name: obsolete modulation by virus of host autophagy namespace: biological_process -def: "Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp] +def: "OBSOLETE. Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp] +comment: This term was osboleted because it represents the same process as symbiont-mediated perturbation of host autophagy ; GO:0075071. synonym: "regulation by virus of host autophagy" EXACT [GOC:bf] -is_a: GO:0019054 ! modulation by virus of host cellular process +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI +is_obsolete: true +replaced_by: GO:0075071 created_by: bf creation_date: 2011-06-22T04:19:19Z @@ -230096,13 +230099,15 @@ creation_date: 2011-06-22T04:24:47Z [Term] id: GO:0039521 -name: suppression by virus of host autophagy +name: obsolete suppression by virus of host autophagy namespace: biological_process -def: "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp, UniProtKB-KW:KW-1083, VZ:845] +def: "OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host." [GOC:bf, GOC:sp] +comment: This term was obsoleted because it represents the same process as symbiont-mediated suppression of host autophagy ; GO:0140321. synonym: "inhibition by virus of host autophagy" EXACT [GOC:bf] -synonym: "inhibition of host autophagy by virus" EXACT [UniProtKB-KW:KW-1083] synonym: "negative regulation by virus of host autophagy" BROAD [GOC:bf] -is_a: GO:0039519 ! modulation by virus of host autophagy +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI +is_obsolete: true +replaced_by: GO:0140321 created_by: bf creation_date: 2011-06-22T04:30:11Z @@ -231499,10 +231504,12 @@ creation_date: 2012-08-10T15:04:12Z [Term] id: GO:0039637 -name: catabolism by virus of host DNA +name: obsolete catabolism by virus of host DNA namespace: biological_process -def: "The breakdown of host DNA, deoxyribonucleic acid, by a virus." [GOC:bf, GOC:bm, GOC:jl] -is_a: GO:0019048 ! modulation by virus of host process +def: "OBSOLETE. The breakdown of host DNA, deoxyribonucleic acid, by a virus." [GOC:bf, GOC:bm, GOC:jl] +comment: This term was obsoleted because it was an unnecessary grouping class. +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI +is_obsolete: true created_by: bf creation_date: 2012-08-10T15:59:22Z @@ -257386,15 +257393,20 @@ is_a: GO:0051701 ! biological process involved in interaction with host [Term] id: GO:0044418 -name: translocation of DNA into host +name: obsolete translocation of DNA into host namespace: biological_process alt_id: GO:0051837 -def: "The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc] +def: "OBSOLETE. The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc] +comment: This term was obsoleted because it was redundant with other terms. synonym: "translocation of DNA into other organism during symbiotic interaction" BROAD [GOC:tb] synonym: "translocation of DNA into other organism involved in symbiotic interaction" BROAD [] synonym: "transport of DNA into host" EXACT [] synonym: "transport of DNA into other organism during symbiotic interaction" BROAD [] -is_a: GO:0044417 ! translocation of molecules into host +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI +is_obsolete: true +consider: GO:0075506 +consider: GO:0075507 +consider: GO:0075508 [Term] id: GO:0044419 @@ -281518,7 +281530,8 @@ synonym: "intronless viral mRNA export from host nucleus" RELATED [] synonym: "intronless viral mRNA export out of nucleus" EXACT [] synonym: "intronless viral mRNA transport from nucleus to cytoplasm" EXACT [] synonym: "intronless viral mRNA-nucleus export" EXACT [] -is_a: GO:0044417 ! translocation of molecules into host +is_a: GO:0016032 ! viral process +relationship: part_of GO:0019080 ! viral gene expression [Term] id: GO:0046785 @@ -332122,8 +332135,7 @@ name: modulation of nutrient release by host namespace: biological_process def: "Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] synonym: "modulation by symbiont of nutrient release from host" EXACT [] -is_a: GO:0044003 ! symbiont-mediated perturbation of host process -relationship: part_of GO:0044002 ! acquisition of nutrients from host +is_a: GO:0044002 ! acquisition of nutrients from host [Term] id: GO:0052092 @@ -425073,7 +425085,8 @@ name: degradation of host chromosome by virus namespace: biological_process def: "The catabolic breakdown of the DNA of a host chromosome by a virus. This occurs during infection of bacteria by some phages. It frees up a large pool of nucleoside 5'-triphophates for use in viral DNA synthesis." [PMID:163355, PMID:335083, PMID:3972821, PMID:5263754, VZ:3947] xref: VZ:3947 -is_a: GO:0039637 ! catabolism by virus of host DNA +is_a: GO:0016032 ! viral process +relationship: part_of GO:0039693 ! viral DNA genome replication [Term] id: GO:0099016 @@ -531062,14 +531075,17 @@ creation_date: 2014-11-24T13:38:34Z [Term] id: GO:1903652 -name: modulation by virus of host cytoplasmic transport +name: obsolete modulation by virus of host cytoplasmic transport namespace: biological_process -def: "Modulation by an infecting virus of host cytoplasmic transport." [GO_REF:0000063, GOC:TermGenie, PMID:25049409] +def: "OBSOLETE. Modulation by an infecting virus of host cytoplasmic transport." [GO_REF:0000063, GOC:TermGenie, PMID:25049409] +comment: This term was obsoleted because it represents the same process as symbiont-mediated perturbation of host intracellular transport ; GO:0052038. synonym: "regulation by virus of host cytoplasmic streaming" EXACT [] synonym: "regulation by virus of host cytoplasmic transport" EXACT [] synonym: "viral modulation of host cytoplasmic trafficking" EXACT [] -is_a: GO:0019054 ! modulation by virus of host cellular process property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26386" xsd:anyURI +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26621" xsd:anyURI +is_obsolete: true +replaced_by: GO:0052038 created_by: jl creation_date: 2014-11-24T17:22:04Z