Obsoletion notice: serine/pyruvate/aspartate/glutamine/erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic/catabolic/biosynthetic process terms

[edwong57]

Dear all,

The proposal has been made to obsolete:
GO:0009069 serine family amino acid metabolic process
GO:0009078 pyruvate family amino acid metabolic process
GO:0009066 aspartate family amino acid metabolic process
GO:0009064 glutamine family amino acid metabolic process
GO:0000820 regulation of glutamine family amino acid metabolic process
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process

GO:0009065 glutamine family amino acid catabolic process
GO:0009068 aspartate family amino acid catabolic process
GO:0009071 serine family amino acid catabolic process
GO:0009080 pyruvate family amino acid catabolic process
GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process

GO:0009067 aspartate family amino acid biosynthetic process
GO:0009070 serine family amino acid biosynthetic process
GO:0009079 pyruvate family amino acid biosynthetic process
GO:0009084 glutamine family amino acid biosynthetic process
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process

The reason for obsoletion is that these terms are unnecessary grouping terms.

Annotations:
There are 26 experimental annotations to this term by (list of impacted groups and their respective numbers of EXP and ISS annotations).

AgBase 1
AspGD 2
BHF-UCL 3
CACAO 1
FlyBase 1
MGI 2
MTBBASE 1
Reactome 4
RGD 1
SGD 3
TAIR 1
TIGR 4
UniProt 3

There are 7 InterPro2GO/UniRule/UniProtKW mappings to this term.
Hamap 1
UniRule 1
Reactome 3
Interpro 2

These terms are not present in any subset.

Annotations can be viewed here: geneontology/go-annotation#5635.

Any comments can be added to the issue: geneontology/go-ontology#29444 (comment).

Unless objections are received by 2/10/25, we will assume that you agree to this change.

Thanks,

The GO-Ontology Editors