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Obsoletion notice: single-step processes from UniPathway #395

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pgaudet opened this issue Oct 25, 2022 · 0 comments
Open

Obsoletion notice: single-step processes from UniPathway #395

pgaudet opened this issue Oct 25, 2022 · 0 comments

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@pgaudet
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pgaudet commented Oct 25, 2022

Dear all,

The proposal has been made to obsolete the following single-step processes:

  • GO:0002195 2-methylthio-N-6-(cis-hydroxy)isopentenyl adenosine-tRNA biosynthesis

tRNA maturation; consider: GO:0035597 N6-isopentenyladenosine methylthiotransferase activity & GO:0006400 tRNA modification

  • GO:0035998 7,8-dihydroneopterin 3'-triphosphate biosynthetic process

folic acid synthsesis; consider GO:0003933 GTP cyclohydrolase activity and GO:0046656 folic acid biosynthetic process

  • GO:0035975 carbamoyl phosphate catabolic process

pyrimidines and arginine synthesis, consider carbamate kinase activity, GO:0006526 arginine biosynthetic process and GO:0019856 pyrimidine nucleobase biosynthetic process

  • GO:0097290 alpha-ribazole biosynthetic process
    single step process; consider GO:0043755 alpha-ribazole phosphatase activity & 'GO:0009236 cobalamin biosynthetic process'

The reason for obsoletion is that these represent molecular functions. There are no annotations to these terms; these terms are not in any subsets. These terms were mapped to UniPathway, which is being retired.

You can comment on the ticket: geneontology/go-ontology#24258

Thanks, Pascale

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