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Review annotations to GO:0007231 osmosensory signaling pathway & some children #4928

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pgaudet opened this issue Jan 16, 2024 · 5 comments
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annotation review direct_ann_to_list_of_terms Direct annotations to list of GO terms

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@pgaudet
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pgaudet commented Jan 16, 2024

GO:0000161 osmosensory signaling MAPK cascade
GO:0007231 osmosensory signaling pathway
GO:0140531 regulation of osmosensory signaling MAPK cascade
GO:0140532 negative regulation of osmosensory signaling MAPK cascade

@pgaudet
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pgaudet commented Jan 17, 2024

@srengel FYI
No action needed, all annotations will be remapped

@pgaudet pgaudet closed this as completed Jan 17, 2024
@RLovering RLovering reopened this Jan 17, 2024
@RLovering
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Hi Pascale

why is GO:0007231 osmosensory signaling pathway being removed? UCL has 3 exit annotations to this term. Sorry I couldn't find any other information about this

Best

Ruth

@pgaudet
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pgaudet commented Jan 17, 2024

Hi @RLovering

Sorry, GO:0007231 osmosensory signaling pathway is not being obsoleted, only these:

GO:0000161 osmosensory signaling MAPK cascade > GO:0038066 'p38MAPK cascade'
GO:0140531 regulation of osmosensory signaling MAPK cascade > GO:1900744 regulation of p38MAPK cascade
GO:0140532 negative regulation of osmosensory signaling MAPK cascade > GO:1903753 negative regulation of p38MAPK cascade

@pgaudet pgaudet closed this as completed Jan 17, 2024
@RLovering
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thanks ;)

@robnash
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robnash commented Jan 17, 2024

Just saw the proposal re the obsoletion notice. Can there at least be some synonyms added to the p38MAPK terms as yeast researchers usually do not refer to this as a p38MAPK cascade?

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Labels
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