Review annotations to GO:0018142 protein-DNA covalent cross-linking and descendents

[raymond91125]

Dear all,

The proposal has been made to obsolete
GO:0018142 protein-DNA covalent cross-linking
This term appears to represent a single-step MF, newly created GO:0160129 protein-DNA covalent cross-linking activity
GO:0018145 protein-DNA covalent cross-linking via peptidyl-serine (no annotation)
GO:0018164 protein-DNA covalent cross-linking via peptidyl-threonine (no annotation)
GO:0045327 protein-DNA covalent cross-linking via peptidyl-tyrosine (no annotation)
GO:0045326 protein-DNA covalent cross-linking via the 3'-end to peptidyl-tyrosine (no annotation)
GO:0018163 protein-DNA covalent cross-linking via the 5'-end to peptidyl-tyrosine (no annotation)

see geneontology/go-ontology#26415

Experimental annotations that need to be reviewed are here:
https://docs.google.com/spreadsheets/d/1qqqa7Dc_v4OVWnJZOp-PqsPvDCH4qi-0hkxv0B0kjWU

Impacted groups:
MGI 1
UniProt 5

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Mappings that need to be reviewed: (InterPro2GO, UniProt-Keywords, UniRule)
GO:0018142 interpro2go InterPro:IPR003365 Viral replication-associated protein, N-terminal > GO:protein-DNA covalent cross-linking ; GO:0018142
GO:0018142 interpro2go InterPro:IPR003738 SOS response associated peptidase (SRAP) > GO:protein-DNA covalent cross-linking ; GO:0018142
GO:0018142 interpro2go InterPro:IPR008770 DNA terminal protein Gp3 > GO:protein-DNA covalent cross-linking ; GO:0018142
GO:0018145 resid2go RESID:AA0246 > GO:protein-DNA covalent cross-linking via peptidyl-serine ; GO:0018145
GO:0018163 resid2go RESID:AA0254 > GO:protein-DNA covalent cross-linking via the 5'-end to peptidyl-tyrosine ; GO:0018163
GO:0018164 resid2go RESID:AA0255 > GO:protein-DNA covalent cross-linking via peptidyl-threonine ; GO:0018164
GO:0045326 resid2go RESID:AA0323 > GO:protein-DNA covalent cross-linking via the 3'-end to peptidyl-tyrosine ; GO:0045326

Thanks.

[raymond91125]

@pgaudet Whom should be assigned for resid2go? Thanks.

[LiNiMGI]

MGI done.

[pgaudet]

RESID2GO mappings are maintained in the ontology, GO editors manage them. You can just delete them.

[pgaudet]

Hi,

All UniProt annotations were made by @sylvainpoux , so I am reassigning the UniProt reviews to him.

[blazaropinto]

Hi,
I deleted this term from all mentioned entries and added GO:0106300 to IPR003738.
I'm afraid I can't add the newly created term yet.
The changes will be available in the next InterPro release.
Best,
Beatriz

[raymond91125]

Hi,

All UniProt annotations were made by @sylvainpoux , so I am reassigning the UniProt reviews to him.

Should the following file be updated then?
metadata/group-contacts.csv

[pgaudet]

Hi Raymond, no I dont think we need to update the file, usually we have 1-2 contact persons by group but reviews do get reassigned when appropriate.

[suzialeksander]

These terms were obsoleted, any remaining annotations will appear in GORULES error reports