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Review annotations to GO:0044736 acid-sensing ion channel activity #4849

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pgaudet opened this issue Nov 29, 2023 · 5 comments
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Review annotations to GO:0044736 acid-sensing ion channel activity #4849

pgaudet opened this issue Nov 29, 2023 · 5 comments
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annotation review reg_ann_to_list_of_terms Annotations to a list of GO terms (including regulates)

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@pgaudet
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pgaudet commented Nov 29, 2023

Dear all,

The proposal has been made to obsolete GO:0044736 acid-sensing ion channel activity, and its regulation children,
see [LINK TO GO-ONTOLOGY TICKET]

Experimental annotations that need to be reviewed are here: https://docs.google.com/spreadsheets/d/1n7pDCBRcgc513_RMm1ojJA4VdRfR0y1uxjGiP0U04Dk/edit#gid=0

Impacted groups:
FlyBase: 3
MGI: 3
UniProt: 3

Mappings that need to be reviewed:

Reactome:R-HSA-2671885 > GO:acid-sensing ion channel activity ; GO:0044736

Thanks.

@LiNiMGI
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LiNiMGI commented Dec 1, 2023

MGI done.

@hattrill
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hattrill commented Dec 4, 2023

Just waiting for terms to be available in P2GO

@deustp01
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deustp01 commented Dec 4, 2023

The recommended replacement is:
Replacements:
GO:0044736 acid-sensing ion channel activity >> GO:0160128 pH-gated channel activity
Right? If so, R-HSA-2671885 already fixed in local database and the fix will become visible with a=our March 2024 release.
So, done?

@pgaudet
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pgaudet commented Dec 4, 2023

@hattrill

Unfortunately we haven't had a snapshot in several weeks. Hopefully the pipeline problems will get resolved soon and the term will be available.

However this is a term replacement, this will be done automatically in P2GO. Should we close this?

@hattrill
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hattrill commented Dec 5, 2023

@pgaudet then that's fine with me.

@pgaudet pgaudet closed this as completed Dec 5, 2023
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Labels
annotation review reg_ann_to_list_of_terms Annotations to a list of GO terms (including regulates)
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4 participants