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Add gorel.obo slims to repo #37

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dosumis opened this issue Jun 23, 2015 · 4 comments
Open

Add gorel.obo slims to repo #37

dosumis opened this issue Jun 23, 2015 · 4 comments
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@dosumis
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dosumis commented Jun 23, 2015

gorel.obo has many more relations on it than are used by curators. For curator reference, it would be very useful to have an obo format slim that only contains sanctioned AE relations. This can be achieved by subsetting on display_for_curators. Other subsets, which roughly classify by usage, might be useful, but are not essential.

Cc @cmungall

@dosumis dosumis changed the title Add gorel.obo slim's to repo Add gorel.obo slims to repo Jun 23, 2015
@hdietze
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hdietze commented Jun 30, 2015

The following things are required:

  • add a target for the gorel slims to the Makefile (ontology/extensions/Makefile)
  • do initial commit to SVN
  • update (Jenkins job)[http://build.berkeleybop.org/job/build-go-relations/]

@dosumis
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dosumis commented Jun 30, 2015

OK. I'll give that a go then.

@dosumis
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dosumis commented Jul 2, 2015

add a target for the gorel slims to the Makefile (ontology/extensions/Makefile)

Is there an owltools command for generating slims, or should I use obo-grep.pl ?

@hdietze
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hdietze commented Jul 2, 2015

the owltools command is:
--extract-subset SUBSET
"Extract a subset (aka slim) from an ontology, storing subset in place of existing ontology"

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