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Switch to the new go-db-xrefs.json produced on @geneontology/go-site #164

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kltm opened this issue Dec 4, 2014 · 2 comments
Open

Switch to the new go-db-xrefs.json produced on @geneontology/go-site #164

kltm opened this issue Dec 4, 2014 · 2 comments
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@kltm
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kltm commented Dec 4, 2014

As stated, switch to the new go-db-xrefs.json produced on kltm/go-site. This depends on geneontology/go-site#33.

@kltm kltm added this to the 2.2 milestone Dec 4, 2014
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kltm commented Jan 29, 2015

Well, since we're about to switch to the new upstream geneontology/go-site/metadata/db-xrefs.yaml, this will be pushed down the road a little. Punt to 2.3.

@kltm kltm modified the milestones: 2.3, 2.2 Jan 29, 2015
@kltm kltm changed the title Switch to the new go-db-xrefs.json produced on kltm/go-site Switch to the new go-db-xrefs.json produced on @geneontology/go-site Apr 7, 2015
kltm added a commit that referenced this issue Aug 15, 2015
… at least as good as the previous process (proofed with /xrefs for a few entries); outlink bug fix
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kltm commented Aug 15, 2015

@cmungall , before I close this out (as it seems to be no worse than the current implementation), I wanted to ask about this:

https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml#L2326
http://amigo.geneontology.org/xrefs#TAIR

AmiGO currently does not really use entity types, just the database name for the look ups. However, that means that for things like TAIR, we're just using the last one for the map. Is that acceptable behavior? I seems to be the current behavior, and I'm not sure of an easy fix, but it might be good to talk about it.

@kltm kltm modified the milestones: 2.3, 2.4 Aug 26, 2015
@kltm kltm modified the milestones: 2.4, 2.5 Mar 2, 2016
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