onto-term.patch

Index: Bio/Annotation/OntologyTerm.pm
*** Bio/Annotation/OntologyTerm.pm	28 Feb 2003 05:15:42 -0000	1.5
--- Bio/Annotation/OntologyTerm.pm	4 Apr 2003 15:39:25 -0000
***************
*** 388,392 ****
--- 388,490 ----
      return shift->term()->remove_synonyms(@_);
  } # remove_synonyms
  
+ =head2 get_dblinks
+ 
+  Title   : get_dblinks()
+  Usage   : @ds = $term->get_dblinks();
+  Function: Returns a list of each dblinks of this GO term.
+  Returns : A list of dblinks [array of [scalars]].
+  Args    :
+ 
+ =cut
+ 
+ sub get_dblinks {
+     return shift->term->get_dblinks(@_);
+ } # get_dblinks
+ 
+ 
+ =head2 add_dblink
+ 
+  Title   : add_dblink
+  Usage   : $term->add_dblink( @dbls );
+            or
+            $term->add_dblink( $dbl );                  
+  Function: Pushes one or more dblinks
+            into the list of dblinks.
+  Returns : 
+  Args    : One  dblink [scalar] or a list of
+             dblinks [array of [scalars]].
+ 
+ =cut
+ 
+ sub add_dblink {
+     return shift->term->add_dblink(@_);
+ } # add_dblink
+ 
+ 
+ =head2 remove_dblinks
+ 
+  Title   : remove_dblinks()
+  Usage   : $term->remove_dblinks();
+  Function: Deletes (and returns) the definition references of this GO term.
+  Returns : A list of definition references [array of [scalars]].
+  Args    :
+ 
+ =cut
+ 
+ sub remove_dblinks {
+     return shift->term->remove_dblinks(@_);
+ } # remove_dblinks
+ 
+ =head2 get_secondary_ids
+ 
+  Title   : get_secondary_ids
+  Usage   : @ids = $term->get_secondary_ids();
+  Function: Returns a list of secondary identifiers of this Term.
+ 
+            Secondary identifiers mostly originate from merging terms,
+            or possibly also from splitting terms.
+ 
+  Returns : A list of secondary identifiers [array of [scalar]]
+  Args    :
+ 
+ =cut
+ 
+ sub get_secondary_ids {
+     return shift->term->get_secondary_ids(@_);
+ } # get_secondary_ids
+ 
+ 
+ =head2 add_secondary_id
+ 
+  Title   : add_secondary_id
+  Usage   : $term->add_secondary_id( @ids );
+            or
+            $term->add_secondary_id( $id );                  
+  Function: Adds one or more secondary identifiers to this term.
+  Returns : 
+  Args    : One or more secondary identifiers [scalars]
+ 
+ =cut
+ 
+ sub add_secondary_id {
+     return shift->term->add_secondary_id(@_);
+ } # add_secondary_id
+ 
+ 
+ =head2 remove_secondary_ids
+ 
+  Title   : remove_secondary_ids
+  Usage   : $term->remove_secondary_ids();
+  Function: Deletes (and returns) the secondary identifiers of this Term.
+  Returns : The previous list of secondary identifiers [array of [scalars]]
+  Args    :
+ 
+ =cut
+ 
+ sub remove_secondary_ids {
+     return shift->term->remove_secondary_ids(@_);
+ } # remove_secondary_ids
+ 
  
  1;