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Incorporate the ability to degenerate sequences that have codon information. #93

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djlohman opened this issue Feb 20, 2022 · 0 comments

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djlohman commented Feb 20, 2022

This is another optional improvement that might take too long to implement, but would nonetheless be extremely useful.

Incorporate the capability of degenerating some or all loci
http://www.phylotools.com/ptdegenoverview.htm

Saturated 3rd codon positions can create spurious, misleading phylogenetic signal. Using degenerated sequences can help with this.

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