From e60598934257561f07d6ae38ca3c9f50ecf7c02a Mon Sep 17 00:00:00 2001
From: Nils Homer <nh13@users.noreply.github.com>
Date: Wed, 4 Dec 2024 09:56:40 -0700
Subject: [PATCH 1/3] ci: migrate ubuntu-latest to ubuntu-24.04

---
 .github/workflows/unittests.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/unittests.yaml b/.github/workflows/unittests.yaml
index e417d04..b0c286f 100644
--- a/.github/workflows/unittests.yaml
+++ b/.github/workflows/unittests.yaml
@@ -4,7 +4,7 @@ on: [push, pull_request]
 
 jobs:
   test:
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     steps:
       - name: Checkout
         uses: actions/checkout@v2
@@ -38,7 +38,7 @@ jobs:
     if: github.repository == 'fulcrumgenomics/sopt' && github.ref == 'refs/heads/main'
     
     needs: test
-    runs-on: ubuntu-latest
+    runs-on: ubuntu-24.04
     env:
       SONATYPE_USER: ${{ secrets.SONATYPE_USER }}
       SONATYPE_PASS: ${{ secrets.SONATYPE_PASS }}

From 8fcfa94ec21dacb9bbf759108419b330393359d8 Mon Sep 17 00:00:00 2001
From: Nils Homer <nh13@users.noreply.github.com>
Date: Wed, 4 Dec 2024 11:31:59 -0700
Subject: [PATCH 2/3] Update unittests.yaml

---
 .github/workflows/unittests.yaml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/unittests.yaml b/.github/workflows/unittests.yaml
index b0c286f..11e8110 100644
--- a/.github/workflows/unittests.yaml
+++ b/.github/workflows/unittests.yaml
@@ -5,6 +5,7 @@ on: [push, pull_request]
 jobs:
   test:
     runs-on: ubuntu-24.04
+    environment: github-actions
     steps:
       - name: Checkout
         uses: actions/checkout@v2
@@ -39,6 +40,7 @@ jobs:
     
     needs: test
     runs-on: ubuntu-24.04
+    environment: github-actions
     env:
       SONATYPE_USER: ${{ secrets.SONATYPE_USER }}
       SONATYPE_PASS: ${{ secrets.SONATYPE_PASS }}

From 2cecadd4f702d8e86ab2b1aaa92c0b54818bdaf6 Mon Sep 17 00:00:00 2001
From: Nils Homer <nh13@users.noreply.github.com>
Date: Wed, 4 Dec 2024 11:32:52 -0700
Subject: [PATCH 3/3] Update unittests.yaml

---
 .github/workflows/unittests.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/unittests.yaml b/.github/workflows/unittests.yaml
index 11e8110..a7ae986 100644
--- a/.github/workflows/unittests.yaml
+++ b/.github/workflows/unittests.yaml
@@ -22,6 +22,7 @@ jobs:
       - name: Code Coverage
         uses: codecov/codecov-action@v1
         with:
+          token: ${{ secrets.CODECOV_TOKEN }}
           flags: unittests # optional
           fail_ci_if_error: true # optional (default = false)
           verbose: true # optional (default = false)