diff --git a/src/main/scala/com/fulcrumgenomics/bam/SortBam.scala b/src/main/scala/com/fulcrumgenomics/bam/SortBam.scala index 02f5a8f63..ad5d63212 100644 --- a/src/main/scala/com/fulcrumgenomics/bam/SortBam.scala +++ b/src/main/scala/com/fulcrumgenomics/bam/SortBam.scala @@ -41,7 +41,7 @@ import com.fulcrumgenomics.util.Io |and several |4. **RandomQuery**: sorts the reads into a random order but keeps reads with the same | queryname together. The ordering is deterministic for any given input. - |5. **TemplateCoordinate**: sorts the reads The sort order used by `GroupReadByUmi`. Sorts reads by + |5. **TemplateCoordinate**: The sort order used by `GroupReadByUmi`. Sorts reads by | the earlier unclipped 5' coordinate of the read pair, the higher unclipped 5' coordinate of the | read pair, library, the molecular identifier (MI tag), read name, and if R1 has the lower | coordinates of the pair.