imaging.yaml

---
install_resolver_dependencies: true
install_tool_dependencies: false

tools:

  - name: cp_cellprofiler4
    owner: bgruening
    tool_panel_section_label: "Imaging"

  - name: overlay_images
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: color_deconvolution
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: 2d_histogram_equalization
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: 2d_simple_filter
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: anisotropic_diffusion
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: 2d_auto_threshold
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: 2d_local_threshold
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: segmetrics
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: superdsm
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: landmark_registration
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: landmark_registration_ls
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: image_registration_affine
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: projective_transformation
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: projective_transformation_points
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: spot_detection_2d
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: points_association_nn
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: curve_fitting
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: imagecoordinates_flipaxis
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: 2d_split_binaryimage_by_watershed
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: 2d_filter_segmentation_by_features
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: binary2labelimage
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: binaryimage2points
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: mergeneighboursinlabelimage
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: scale_image
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: slice_image
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: split_labelmap
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: concat_channels
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: points2binaryimage
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: points2labelimage
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: labelimage2points
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: permutate_axis
    owner: imgteam
    tool_panel_section_label: "Imaging"
  
  - name: mahotas_features
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: 2d_feature_extraction
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: count_objects
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: coordinates_of_roi
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: detection_viz
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: colocalization_viz
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: overlay_moving_and_fixed_image
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: overlay_segmentation_mask
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: wsi_extract_top_view
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: visceral_evaluatesegmentation
    owner: imgteam
    tool_panel_section_label: "Imaging"
  
  - name: bfconvert
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: image_info
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_binary_to_edm
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_compare_elastic_raw
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_compose_raw_elastic
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_analyze_particles_binary
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_skeletonize3d
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_create_image
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_noise
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_find_edges
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_shadows
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_compose_raw
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_enhance_contrast
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_find_maxima
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_align
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_watershed_binary
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_raw_transform
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_smooth
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_analyze_skeleton
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_compare_elastic
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_compare_raw
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_convert_to_raw
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_make_binary
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_sharpen
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_compose_elastic
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_adjust_threshold_binary
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_math
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_elastic_transform
    owner: imgteam
    tool_panel_section_label: "Imaging"

  - name: imagej2_bunwarpj_adapt_transform
    owner: imgteam
    tool_panel_section_label: "Imaging"
    
  - name: unzip
    owner: imgteam
    tool_panel_section_label: 'Collection Operations'

  - name: cp_cellprofiler
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_common
    owner: bgruening
    tool_panel_section_label: "Imaging"    

  - name: cp_color_to_gray
    owner: bgruening
    tool_panel_section_label: "Imaging"    

  - name: cp_tile
    owner: bgruening
    tool_panel_section_label: "Imaging"    

  - name: cp_track_objects
    owner: bgruening
    tool_panel_section_label: "Imaging"    

  - name: cp_overlay_outlines
    owner: bgruening
    tool_panel_section_label: "Imaging"    

  - name: cp_convert_objects_to_image
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_display_data_on_image
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_enhance_or_suppress_features
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_export_to_spreadsheet
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_gray_to_color
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_identify_primary_objects
    owner: bgruening
    tool_panel_section_label: "Imaging"  
    
  - name: cp_mask_image
    owner: bgruening
    tool_panel_section_label: "Imaging"      
    
  - name: cp_measure_granularity
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_measure_image_area_occupied
    owner: bgruening
    tool_panel_section_label: "Imaging"  
    
  - name: cp_measure_image_intensity
    owner: bgruening
    tool_panel_section_label: "Imaging"  
    
  - name: cp_measure_image_quality
    owner: bgruening
    tool_panel_section_label: "Imaging"  
    
  - name: cp_measure_object_intensity
    owner: bgruening
    tool_panel_section_label: "Imaging"  
  
  - name: cp_measure_object_size_shape
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_measure_texture
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_relate_objects
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_save_images
    owner: bgruening
    tool_panel_section_label: "Imaging"
    
  - name: cp_image_math
    owner: bgruening
    tool_panel_section_label: "Imaging"