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compile.10-17-2017.try2
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None of WRF_EM_CORE, WRF_NMM_CORE,
specified in shell environment....
==============================================================================================
V3.8
Compiling: WRF_EM_CORE
WRFIO_NCD_LARGE_FILE_SUPPORT=1
Linux fe8 2.6.32-642.15.1.el6.x86_64 #1 SMP Fri Feb 24 14:31:22 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 15.0.3.187 Build 20150407
Copyright (C) 1985-2015 Intel Corporation. All rights reserved.
==============================================================================================
setting parallel make -j 2
==============================================================================================
The following indicate the compilers selected to build the WRF system
Serial Fortran compiler (mostly for tool generation):
which SFC
/apps/intel/composer_xe_2015.3.187/bin/intel64/ifort
Serial C compiler (mostly for tool generation):
which SCC
/apps/intel/composer_xe_2015.3.187/bin/intel64/icc
Fortran compiler for the model source code:
which FC
/apps/intel/impi/5.1.1.109/intel64/bin/mpiifort
Will use 'time' to report timing information
C compiler for the model source code:
which CC
/apps/intel/impi/5.1.1.109/intel64/bin/mpiicc
==============================================================================================
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " ext
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
( cd frame ; make -i -r externals )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 ; \
make -j 2 FC="ifort -real-size `expr 8 \* 4` -i4 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I. -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 " AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90'
make[3]: Nothing to be done for `default'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf ; \
make -j 2 NETCDFPATH="/apps/netcdf/3.6.3-intel" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
CC="icc" CFLAGS="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" \
FC="ifort -real-size `expr 8 \* 4` -i4 -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf ; \
make -j 2 NETCDFPATH="/apps/pnetcdf/1.6.1-intel15-impi5" RANLIB="ranlib" CPP="/lib/cpp -P -C -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0" \
FC="time mpiifort -f90=ifort -real-size `expr 8 \* 4` -i4 -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/ioapi_share ; \
make -i -r NATIVE_RWORDSIZE="4" RWORDSIZE="4" AR="ar" ARFLAGS="ru" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/ioapi_share'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/ioapi_share'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share ; \
make -j 2 CC="icc" CFLAGS="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
FC="ifort -real-size `expr 8 \* 4` -i4 -I. -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
ar ru ./libio_grib_share.a io_grib_share.o get_region_center.o gridnav.o open_file.o
ranlib ./libio_grib_share.a
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1 ; \
make -j 2 CC="icc" CFLAGS="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip -DDM_PARALLEL -DMAX_HISTORY=25 -DNMM_CORE=0" RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
FC="ifort -real-size `expr 8 \* 4` -i4 -I. -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " TRADFLAG="" AR="ar" ARFLAGS="ru" archive)
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
Doing make archive on library subdirectory MEL_grib1
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
make[5]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
ar ru ../libio_grib1.a FTP_getfile.o apply_bitmap.o display_gribhdr.o gbyte.o grib_dec.o grib_enc.o grib_seek.o gribgetbds.o gribgetbms.o gribgetgds.o gribgetpds.o gribhdr2file.o gribputbds.o gribputgds.o gribputpds.o hdr_print.o init_dec_struct.o init_enc_struct.o init_gribhdr.o init_struct.o ld_dec_lookup.o ld_enc_input.o ld_enc_lookup.o ld_grib_origctrs.o make_default_grbfn.o make_grib_log.o map_lvl.o map_parm.o pack_spatial.o prt_inp_struct.o upd_child_errmsg.o prt_badmsg.o swap.o grib_uthin.o set_bytes.o
ranlib ../libio_grib1.a
make[5]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/MEL_grib1'
Doing make archive on library subdirectory grib1_util
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
make[5]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
ar ru ../libio_grib1.a alloc_2d.o read_grib.o write_grib.o
ranlib ../libio_grib1.a
make[5]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/grib1_util'
Doing make archive on library subdirectory WGRIB
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/WGRIB'
make[4]: Nothing to be done for `archive'.
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/WGRIB'
make[4]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
ar ru ./libio_grib1.a grib1_routines.o gribmap.o io_grib1.o trim.o
ranlib ./libio_grib1.a
make[4]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int ; \
make -j 2 CC="mpiicc -cc=icc -DMPI2_SUPPORT -DMPI2_THREAD_SUPPORT -DFSEEKO64_OK " CFLAGS_LOCAL="-vec-threshold0 -override_limits -w -O3 -xSSE4.2 -ip " RM="rm -f" RANLIB="ranlib" CPP="/lib/cpp -P -C" \
FC="time mpiifort -f90=ifort -real-size `expr 8 \* 4` -i4 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -openmp -fpp -auto" FGREP="fgrep -iq" \
TRADFLAG="" AR="ar" ARFLAGS="ru" ARCHFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0" all )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
( cd /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5 ; \
make -j 2 FC="ifort" FFLAGS="-real-size `expr 8 \* 4` -i4 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" AR="ar" \
ARFLAGS="ru" CPP="/lib/cpp -P -C" CPPFLAGS="-DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -DWRF_DFI_RADAR=1 -I. " RM="rm -f" )
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5'
ar ru libfftpack.a c1f2kb.o cfft1b.o cmf3kf.o cosqb1.o costmi.o dcosq1f.o dfftb1.o mradb2.o mrfti1.o r1fgkf.o rfft2i.o sinqmi.o z1f2kf.o zfft1f.o zmf4kb.o c1f2kf.o cfft1f.o cmf4kb.o cosqf1.o d1f2kb.o dcosq1i.o dfftf1.o mradb3.o msntb1.o r4_factor.o rfftb1.o sint1b.o z1f3kb.o zfft1i.o zmf4kf.o c1f3kb.o cfft1i.o cmf4kf.o cosqmb.o d1f2kf.o dcosqb1.o dffti1.o mradb4.o msntf1.o r4_mcfti1.o rfftf1.o sint1f.o z1f3kf.o zfft2b.o zmf5kb.o c1f3kf.o cfft2b.o cmf5kb.o cosqmf.o d1f3kb.o dcosqf1.o dsint1b.o mradb5.o r1f2kb.o r4_tables.o rffti1.o sint1i.o z1f4kb.o zfft2f.o zmf5kf.o c1f4kb.o cfft2f.o cmf5kf.o cosqmi.o d1f3kf.o dcost1b.o dsint1f.o mradbg.o r1f2kf.o r8_factor.o rfftmb.o sintb1.o z1f4kf.o zfft2i.o zmfgkb.o c1f4kf.o cfft2i.o cmfgkb.o cost1b.o d1f4kb.o dcost1f.o dsint1i.o mradf2.o r1f3kb.o r8_mcfti1.o rfftmf.o sintf1.o z1f5kb.o zfftmb.o zmfgkf.o c1f5kb.o cfftmb.o cmfgkf.o cost1f.o d1f4kf.o dcost1i.o dsintb1.o mradf3.o r1f3kf.o r8_tables.o rfftmi.o sintmb.o z1f5kf.o zfftmf.o zmfm1b.o c1f5kf.o cfftmf.o cmfm1b.o cost1i.o d1f5kb.o dcostb1.o dsintf1.o mradf4.o r1f4kb.o rfft1b.o sinq1b.o sintmf.o z1fgkb.o zfftmi.o zmfm1f.o c1fgkb.o cfftmi.o cmfm1f.o costb1.o d1f5kf.o dcostf1.o mcsqb1.o mradf5.o r1f4kf.o rfft1f.o sinq1f.o sintmi.o z1fgkf.o zmf2kb.o c1fgkf.o cmf2kb.o cosq1b.o costf1.o d1fgkb.o dfft1b.o mcsqf1.o mradfg.o r1f5kb.o rfft1i.o sinq1i.o xercon.o z1fm1b.o zmf2kf.o c1fm1b.o cmf2kf.o cosq1f.o costmb.o d1fgkf.o dfft1f.o mcstb1.o mrftb1.o r1f5kf.o rfft2b.o sinqmb.o xerfft.o z1fm1f.o zmf3kb.o c1fm1f.o cmf3kb.o cosq1i.o costmf.o dcosq1b.o dfft1i.o mcstf1.o mrftf1.o r1fgkb.o rfft2f.o sinqmf.o z1f2kb.o zfft1b.o zmf3kf.o
ranlib libfftpack.a
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5'
( if [ ! -e /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms.c ] ; then \
/bin/cp /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms_warning /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms.c ; \
cat /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/gen_comms.c >> /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/gen_comms.c ; fi )
( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
cat /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " toolsdir
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
( cd tools ; make -i -r CC_TOOLS_CFLAGS="-DNMM_CORE=0" CC_TOOLS="icc -DIWORDSIZE=4 -DMAX_HISTORY=25" )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools'
make[2]: `registry' is up to date.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
/bin/rm -f main/libwrflib.a main/libwrflib.lib
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " framework
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
( cd frame ; make -i -r -j 2 framework; \
cd ../external/io_netcdf ; \
make -i -r NETCDFPATH="/apps/netcdf/3.6.3-intel" FC="time mpiifort -f90=ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C" LDFLAGS="-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip " TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf; \
cd ../io_netcdf ; \
make -i -r NETCDFPATH="/apps/netcdf/3.6.3-intel" FC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C" LDFLAGS="-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip " TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR"; \
cd ../io_pio ; \
echo SKIPPING PIO BUILD make -i -r NETCDFPATH="/apps/pnetcdf/1.6.1-intel15-impi5" FC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" \
CPP="/lib/cpp -P -C" LDFLAGS="-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip " TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
LIB_LOCAL="" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR"; \
cd ../io_int ; \
make -i -r SFC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " FC="ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian " RANLIB="ranlib" CPP="/lib/cpp -P -C -DNONSTANDARD_SYSTEM_FUNC " DM_FC="mpiifort -f90=ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian "\
TRADFLAG="" ESMF_IO_LIB_EXT="-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time" \
ESMF_MOD_DEPENDENCE="/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o" AR="INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR" diffwrf ; \
cd ../../frame )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
ar ru ../main/libwrflib.a module_driver_constants.o module_domain_type.o module_streams.o module_domain.o module_integrate.o module_timing.o module_configure.o module_tiles.o module_machine.o module_nesting.o module_wrf_error.o module_state_description.o module_sm.o module_io.o module_comm_dm.o module_comm_dm_0.o module_comm_dm_1.o module_comm_dm_2.o module_comm_dm_3.o module_comm_dm_4.o module_comm_nesting_dm.o module_dm.o module_quilt_outbuf_ops.o module_io_quilt.o module_intermediate_nmm.o module_cpl.o module_cpl_oasis3.o module_clear_halos.o wrf_num_bytes_between.o wrf_shutdown.o wrf_debug.o libmassv.o collect_on_comm.o hires_timer.o clog.o nl_get_0_routines.o nl_get_1_routines.o nl_get_2_routines.o nl_get_3_routines.o nl_get_4_routines.o nl_get_5_routines.o nl_get_6_routines.o nl_get_7_routines.o nl_set_0_routines.o nl_set_1_routines.o nl_set_2_routines.o nl_set_3_routines.o nl_set_4_routines.o nl_set_5_routines.o nl_set_6_routines.o nl_set_7_routines.o module_alloc_space_0.o module_alloc_space_1.o module_alloc_space_2.o module_alloc_space_3.o module_alloc_space_4.o module_alloc_space_5.o module_alloc_space_6.o module_alloc_space_7.o module_alloc_space_8.o module_alloc_space_9.o
ar: creating ../main/libwrflib.a
ranlib ../main/libwrflib.a
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame'
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[2]: `diffwrf' is up to date.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf'
SKIPPING PIO BUILD make -i -r NETCDFPATH=/apps/pnetcdf/1.6.1-intel15-impi5 FC=ifort -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian RANLIB=ranlib CPP=/lib/cpp -P -C LDFLAGS=-openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip TRADFLAG= ESMF_IO_LIB_EXT=-L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time LIB_LOCAL= ESMF_MOD_DEPENDENCE=/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90/module_utility.o AR=INTERNAL_BUILD_ERROR_SHOULD_NOT_NEED_AR
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
make[2]: `diffwrf' is up to date.
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " shared
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
if [ "`echo -j 2 | sed -e 's/-j//g' -e 's/ \+//g'`" -gt "6" ] ; then \
( cd share ; make -i -r -j 6 ) ; \
else \
( cd share ; make -i -r -j 2 ) ; \
fi
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share'
if [ 0 -eq 1 ] ; then \
make -i -r nmm_contrib ; \
ar ru ../main/libwrflib.a module_model_constants.o module_bc_time_utilities.o module_get_file_names.o module_compute_geop.o module_check_a_mundo.o module_random.o module_llxy.o module_interp_nmm.o module_interp_store.o module_MPP.o module_date_time.o module_bc.o module_io_wrf.o module_soil_pre.o module_io_domain.o module_optional_input.o solve_interface.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_tsin.o landread.o track_driver.o track_input.o bobrand.o wrf_timeseries.o track_driver.o wrf_fddaobs_in.o mediation_nest_move.o setfeenv.o input_wrf.o output_wrf.o wrf_bdyout.o wrf_bdyin.o dfi.o mediation_integrate.o mediation_wrfmain.o ; \
else \
ar ru ../main/libwrflib.a module_model_constants.o module_bc_time_utilities.o module_get_file_names.o module_compute_geop.o module_check_a_mundo.o module_random.o module_llxy.o module_interp_nmm.o module_interp_store.o module_MPP.o module_date_time.o module_bc.o module_io_wrf.o module_soil_pre.o module_io_domain.o module_optional_input.o solve_interface.o mediation_interp_domain.o mediation_force_domain.o mediation_feedback_domain.o start_domain.o init_modules.o set_timekeeping.o interp_fcn.o sint.o wrf_ext_write_field.o wrf_ext_read_field.o wrf_tsin.o landread.o track_driver.o track_input.o bobrand.o wrf_timeseries.o track_driver.o wrf_fddaobs_in.o mediation_nest_move.o setfeenv.o input_wrf.o output_wrf.o wrf_bdyout.o wrf_bdyin.o dfi.o mediation_integrate.o mediation_wrfmain.o ; \
fi
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " physics
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
if [ 0 -eq 0 ] ; then \
( cd phys ; make -i -r CF2=" " ) ; \
else \
( cd phys ; make -i -r CF2="../chem/module_data_mosaic_asect.o" ) ; \
fi
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
if [ 0 -eq 1 ] ; then \
make -i -r -j 2 nmm_contrib ; \
ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_cam_mp_microp_aero.o module_cam_mp_cldwat2m_micro.o module_cam_mp_ndrop.o module_cam_mp_modal_aero_initialize_data_phys.o module_cam_mp_radconstants.o module_cam_mp_conv_water.o module_cam_mp_qneg3.o module_data_cam_mam_aero.o module_data_cam_mam_asect.o module_cam_infnan.o module_bl_ysu.o module_bl_shinhong.o module_bl_mrf.o module_bl_gfs.o module_bl_gfs2011.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_mynn_v36.o module_bl_mynn_v34.o module_bl_fogdes.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_bl_mfshconvpbl.o module_shcu_camuwshcu_driver.o module_shcu_camuwshcu.o module_shcu_grims.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_bl_gbmpbl.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_mskf.o module_cu_tiedtke.o module_cu_ntiedtke.o module_cu_gd.o module_cu_gf_deep.o module_cu_gf_sh.o module_cugf_wrfdrv.o module_cu_nsas.o module_cu_sas.o module_cu_mesosas.o module_cu_osas.o module_cu_kfcup.o module_mp_radar.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_fer_hires.o module_mp_HWRF.o module_mp_thompson.o module_mp_full_sbm.o module_mp_fast_sbm.o module_ltng_lpi.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_milbrandt2mom.o module_mp_nssl_2mom.o module_mp_wdm5.o module_mp_wdm6.o module_mp_cammgmp_driver.o module_ra_sw.o module_ra_clWRF_support.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_rrtmg_lwf.o module_ra_rrtmg_swf.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_flg.o module_ra_HWRF.o module_ra_hs.o module_ra_eclipse.o module_ra_aerosol.o module_sf_sfclay.o module_sf_sfclayrev.o module_sf_gfs.o module_sf_exchcoef.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_clm.o module_sf_ssib.o module_sf_noah_seaice.o module_sf_noah_seaice_drv.o module_sf_noahlsm_glacial_only.o module_sf_noahmp_groundwater.o module_sf_noahmpdrv.o module_sf_noahmplsm.o module_sf_noahmp_glacier.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_pxlsm_data.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_ocean_driver.o module_sf_oml.o module_sf_3dpwp.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_mynn_v36.o module_sf_mynn_v34.o module_sf_fogdes.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_sf_scmflux.o module_sf_scmskintemp.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_lightning_driver.o module_ltng_cpmpr92z.o module_ltng_crmpr92.o module_ltng_iccg.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_fitch.o module_sf_lake.o module_diagnostics_driver.o \
\
module_diag_refl.o ; \
else \
make -i -r -j 2 non_nmm ; \
ar ru ../main/libwrflib.a module_cam_shr_kind_mod.o module_cam_support.o module_cam_shr_const_mod.o module_cam_physconst.o module_cam_cldwat.o module_cam_wv_saturation.o module_cam_esinti.o module_cam_gffgch.o module_cam_error_function.o module_cam_constituents.o module_cam_trb_mtn_stress.o module_cam_molec_diff.o module_cam_upper_bc.o module_cam_bl_diffusion_solver.o module_cam_bl_eddy_diff.o module_cam_mp_microp_aero.o module_cam_mp_cldwat2m_micro.o module_cam_mp_ndrop.o module_cam_mp_modal_aero_initialize_data_phys.o module_cam_mp_radconstants.o module_cam_mp_conv_water.o module_cam_mp_qneg3.o module_data_cam_mam_aero.o module_data_cam_mam_asect.o module_cam_infnan.o module_bl_ysu.o module_bl_shinhong.o module_bl_mrf.o module_bl_gfs.o module_bl_gfs2011.o module_bl_myjpbl.o module_bl_qnsepbl.o module_bl_acm.o module_bl_mynn.o module_bl_mynn_v36.o module_bl_mynn_v34.o module_bl_fogdes.o module_bl_gwdo.o module_bl_myjurb.o module_bl_boulac.o module_bl_camuwpbl_driver.o module_bl_mfshconvpbl.o module_shcu_camuwshcu_driver.o module_shcu_camuwshcu.o module_shcu_grims.o module_cu_camzm_driver.o module_cu_camzm.o module_bl_temf.o module_bl_gbmpbl.o module_cu_g3.o module_cu_kf.o module_cu_bmj.o module_cu_kfeta.o module_cu_mskf.o module_cu_tiedtke.o module_cu_ntiedtke.o module_cu_gd.o module_cu_gf_deep.o module_cu_gf_sh.o module_cugf_wrfdrv.o module_cu_nsas.o module_cu_sas.o module_cu_mesosas.o module_cu_osas.o module_cu_kfcup.o module_mp_radar.o module_mp_kessler.o module_mp_lin.o module_mp_sbu_ylin.o module_mp_wsm3.o module_mp_wsm5.o module_mp_wsm6.o module_mp_etanew.o module_mp_fer_hires.o module_mp_HWRF.o module_mp_thompson.o module_mp_full_sbm.o module_mp_fast_sbm.o module_ltng_lpi.o module_mp_gsfcgce.o module_mp_morr_two_moment.o module_mp_milbrandt2mom.o module_mp_nssl_2mom.o module_mp_wdm5.o module_mp_wdm6.o module_mp_cammgmp_driver.o module_ra_sw.o module_ra_clWRF_support.o module_ra_gsfcsw.o module_ra_goddard.o module_ra_rrtm.o module_ra_rrtmg_lw.o module_ra_rrtmg_sw.o module_ra_rrtmg_lwf.o module_ra_rrtmg_swf.o module_ra_cam_support.o module_ra_cam.o module_ra_gfdleta.o module_ra_flg.o module_ra_HWRF.o module_ra_hs.o module_ra_eclipse.o module_ra_aerosol.o module_sf_sfclay.o module_sf_sfclayrev.o module_sf_gfs.o module_sf_exchcoef.o module_sf_gfdl.o module_sf_slab.o module_sf_noahdrv.o module_sf_noahlsm.o module_sf_clm.o module_sf_ssib.o module_sf_noah_seaice.o module_sf_noah_seaice_drv.o module_sf_noahlsm_glacial_only.o module_sf_noahmp_groundwater.o module_sf_noahmpdrv.o module_sf_noahmplsm.o module_sf_noahmp_glacier.o module_sf_urban.o module_sf_bep.o module_sf_bep_bem.o module_sf_bem.o module_sf_pxlsm.o module_sf_pxlsm_data.o module_sf_ruclsm.o module_sf_sfcdiags.o module_sf_sfcdiags_ruclsm.o module_sf_sstskin.o module_sf_tmnupdate.o module_sf_ocean_driver.o module_sf_oml.o module_sf_3dpwp.o module_sf_myjsfc.o module_sf_qnsesfc.o module_sf_mynn.o module_sf_mynn_v36.o module_sf_mynn_v34.o module_sf_fogdes.o module_sf_pxsfclay.o module_sf_temfsfclay.o module_sf_idealscmsfclay.o module_sf_scmflux.o module_sf_scmskintemp.o module_physics_addtendc.o module_physics_init.o module_gfs_machine.o module_gfs_funcphys.o module_gfs_physcons.o module_progtm.o module_pbl_driver.o module_data_gocart_dust.o module_cumulus_driver.o module_shallowcu_driver.o module_microphysics_driver.o module_microphysics_zero_out.o module_mixactivate.o module_radiation_driver.o module_surface_driver.o module_lightning_driver.o module_ltng_cpmpr92z.o module_ltng_crmpr92.o module_ltng_iccg.o module_fdda_psufddagd.o module_fdda_spnudging.o module_fddagd_driver.o module_fddaobs_rtfdda.o module_fddaobs_driver.o module_wind_fitch.o module_sf_lake.o module_diagnostics_driver.o \
module_fr_fire_driver.o module_fr_fire_driver_wrf.o module_fr_fire_atm.o module_fr_fire_model.o module_fr_fire_core.o module_fr_fire_phys.o module_fr_fire_util.o \
module_diag_afwa.o module_diag_afwa_hail.o module_diag_cl.o module_diag_misc.o module_diag_pld.o module_diag_zld.o ; \
fi
make[3]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
make[3]: Nothing to be done for `non_nmm'.
make[3]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " chemics ; fi
if [ 1 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " em_core ; fi
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
--------------------------------------
if [ 0 -eq 0 ] ; then \
CF= ; \
else \
CF="../chem/module_aerosols_sorgam.o ../chem/module_gocart_aerosols.o ../chem/module_mosaic_driver.o ../chem/module_input_tracer.o ../chem/module_aerosols_soa_vbs.o" ; \
fi
( cd dyn_em ; make -i -r -j 2 CF="" )
make[2]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/dyn_em'
rm -f solve_em.o
sed -e "s/grid%mu/gridmu/g" -e "s/grid%Mu/gridMu/g" -e "s/^\!.*'.*//" -e "s/^ *\!.*'.*//" solve_em.F > solve_em.G
/lib/cpp -P -C -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -DEM_CORE=1 -DNMM_CORE=0 -DNMM_MAX_DIM=2600 -DCOAMPS_CORE=0 -DDA_CORE=0 -DEXP_CORE=0 -DIWORDSIZE=4 -DDWORDSIZE=8 -DRWORDSIZE=4 -DLWORDSIZE=4 -DNONSTANDARD_SYSTEM_FUNC -DDM_PARALLEL -DNETCDF -DPNETCDF -DPNETCDF_QUILT -DHARDCODE_VERTICAL=50 -DUSE_ALLOCATABLES -DGRIB1 -DINTIO -DKEEP_INT_AROUND -DHYBRID_COORD=1 -DLIMIT_ARGS -DCONFIG_BUF_LEN=65536 -DMAX_DOMAINS_F=21 -DMAX_HISTORY=25 -DNMM_NEST=0 -DWRF_DFI_RADAR=1 -I. -D_OPENMP solve_em.G > solve_em.H
solve_em.G:3804:81: warning: missing terminating " character
solve_em.G:3805:81: warning: missing terminating " character
solve_em.G:3806:81: warning: missing terminating " character
solve_em.G:3807:81: warning: missing terminating " character
sed -e "s/gridmu/grid%mu/g" -e "s/gridMu/grid%Mu/g" solve_em.H > solve_em.bb
/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/tools/standard.exe solve_em.bb | /lib/cpp -P -C > solve_em.f90
rm -f solve_em.G solve_em.H solve_em.bb
time mpiifort -f90=ifort -o solve_em.o -c -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -openmp -fpp -auto -I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include -real-size `expr 8 \* 4` -i4 solve_em.f90
solve_em.f90(328): error #5514: A derived type I/O list item that contains a pointer component requires a user-defined derived-type input/output procedure.
print *,'Current time: ', curtime
-----^
solve_em.f90(331): error #5514: A derived type I/O list item that contains a pointer component requires a user-defined derived-type input/output procedure.
print *,'Ring time : ', ringTime
-----^
compilation aborted for solve_em.f90 (code 1)
real 0m23.150s
user 0m16.874s
sys 0m1.593s
make[2]: [solve_em.o] Error 1 (ignored)
ar ru ../main/libwrflib.a module_advect_em.o module_diffusion_em.o module_small_step_em.o module_big_step_utilities_em.o module_em.o module_solvedebug_em.o module_bc_em.o module_init_utilities.o module_wps_io_arw.o module_damping_em.o module_polarfft.o module_force_scm.o module_first_rk_step_part1.o module_first_rk_step_part2.o module_avgflx_em.o module_sfs_nba.o module_convtrans_prep.o module_sfs_driver.o module_stoch.o module_after_all_rk_steps.o init_modules_em.o solve_em.o start_em.o shift_domain_em.o couple_or_uncouple_em.o nest_init_utils.o adapt_timestep_em.o interp_domain_em.o
ar: solve_em.o: No such file or directory
make[2]: [dyn_em] Error 1 (ignored)
make[2]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/dyn_em'
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord'
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " nmm_core ; fi
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " exp_core ; fi
if [ 0 -eq 1 ] ; then make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " wrf_hydro ; fi
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em em_wrf )
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
ranlib libwrflib.a
time mpiifort -f90=ifort -o wrf.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip wrf.o ../main/module_wrf_top.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
libwrflib.a(module_integrate.o): In function `module_integrate_mp_integrate_':
module_integrate.f90:(.text+0x382): undefined reference to `real_time_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(solve_interface.o): In function `solve_interface_':
solve_interface.f90:(.text+0x9a8): undefined reference to `solve_em_'
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(mediation_integrate.o): In function `med_nest_initial_':
mediation_integrate.f90:(.text+0x14a7): undefined reference to `init_domain_vert_nesting_'
mediation_integrate.f90:(.text+0x1b11): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x2569): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x2fa1): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x3a5f): undefined reference to `input_terrain_rsmas_'
mediation_integrate.f90:(.text+0x3e61): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x48b9): undefined reference to `copy_3d_field_'
mediation_integrate.f90:(.text+0x532a): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0x5d82): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0x67ba): undefined reference to `blend_terrain_'
mediation_integrate.f90:(.text+0x74dd): undefined reference to `adjust_tempqv_'
libwrflib.a(mediation_integrate.o): In function `init_domain_constants_':
mediation_integrate.f90:(.text+0xdaac): undefined reference to `init_domain_constants_em_'
libwrflib.a(mediation_force_domain.o): In function `med_force_domain_':
mediation_force_domain.f90:(.text+0x16e8): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x24f9): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x40c8): undefined reference to `couple_or_uncouple_em_'
mediation_force_domain.f90:(.text+0x4edb): undefined reference to `couple_or_uncouple_em_'
libwrflib.a(mediation_feedback_domain.o): In function `med_feedback_domain_':
mediation_feedback_domain.f90:(.text+0x2520): undefined reference to `update_after_feedback_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.34user 0.53system 0:01.63elapsed 54%CPU (0avgtext+0avgdata 59744maxresident)k
20064inputs+58288outputs (13major+68531minor)pagefaults 0swaps
make[1]: [em_wrf] Error 1 (ignored)
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
( cd run ; /bin/rm -f wrf.exe ; ln -s ../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em em_wrf_SST_ESMF ) ; \
fi
build started: Tue Oct 17 14:34:27 GMT 2017
build completed: Tue Oct 17 14:35:10 GMT 2017
--------------------------------------
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em IDEAL_CASE=real em_real )
make[1]: Entering directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
ranlib libwrflib.a
time mpiifort -f90=ifort -o ndown.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip ndown_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
ndown_em.o: In function `MAIN__':
ndown_em.f90:(.text+0x4922): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x4c26): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x4f2a): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x522e): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.f90:(.text+0x5677): undefined reference to `module_big_step_utilities_em_mp_couple_'
ndown_em.o:ndown_em.f90:(.text+0x6340): more undefined references to `module_big_step_utilities_em_mp_couple_' follow
ndown_em.o: In function `MAIN__':
ndown_em.f90:(.text+0x28e19): undefined reference to `copy_3d_field_'
ndown_em.f90:(.text+0x29e79): undefined reference to `blend_terrain_'
ndown_em.f90:(.text+0x2c254): undefined reference to `init_domain_constants_em_'
ndown_em.o: In function `init_domain_constants_em_ptr_':
ndown_em.f90:(.text+0x39e77): undefined reference to `init_domain_constants_em_'
../dyn_em/module_initialize_real.o: In function `module_initialize_real_mp_init_domain_rk_':
module_initialize_real.f90:(.text+0x5a579): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x70fb2): undefined reference to `module_polarfft_mp_pxft_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.36user 0.64system 0:01.40elapsed 72%CPU (0avgtext+0avgdata 58848maxresident)k
0inputs+59224outputs (0major+66756minor)pagefaults 0swaps
make[1]: [em_real] Error 1 (ignored)
#TEMPORARILY REMOVED time mpiifort -f90=ifort -o nup.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip nup_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
time mpiifort -f90=ifort -o tc.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip tc_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
../dyn_em/module_initialize_real.o: In function `module_initialize_real_mp_init_domain_rk_':
module_initialize_real.f90:(.text+0x5a579): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x70fb2): undefined reference to `module_polarfft_mp_pxft_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.33user 0.54system 0:01.21elapsed 71%CPU (0avgtext+0avgdata 58520maxresident)k
0inputs+58864outputs (0major+68215minor)pagefaults 0swaps
make[1]: [em_real] Error 1 (ignored)
time mpiifort -f90=ifort -o real.exe -openmp -fpp -auto -O3 -vec-threshold0 -override_limits -qno-opt-dynamic-align -ip -w -ftz -align all -fno-alias -FR -convert big_endian -vec-threshold0 -override_limits -ip real_em.o ../dyn_em/module_initialize_real.o libwrflib.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/fftpack/fftpack5/libfftpack.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib1/libio_grib1.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_grib_share/libio_grib_share.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int/libwrfio_int.a -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -lesmf_time /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/RSL_LITE/librsl_lite.a /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/module_internal_header_util.o /mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame/pack_utils.o -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -lwrfio_nf -L/apps/netcdf/3.6.3-intel/lib -lnetcdf -L/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_pnetcdf -lwrfio_pnf -L/apps/pnetcdf/1.6.1-intel15-impi5/lib -lpnetcdf
real_em.o: In function `MAIN__':
real_em.f90:(.text+0x10dc): undefined reference to `module_wps_io_arw_mp_read_wps_'
real_em.o: In function `assemble_output_':
real_em.f90:(.text+0x2425): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x26ce): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x2977): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x2c12): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.f90:(.text+0x33d9): undefined reference to `module_big_step_utilities_em_mp_couple_'
real_em.o:real_em.f90:(.text+0x3b89): more undefined references to `module_big_step_utilities_em_mp_couple_' follow
real_em.o: In function `med_sidata_input_':
real_em.f90:(.text+0x74449): undefined reference to `module_wps_io_arw_mp_read_wps_'
../dyn_em/module_initialize_real.o: In function `module_initialize_real_mp_init_domain_rk_':
module_initialize_real.f90:(.text+0x5a579): undefined reference to `blend_terrain_'
module_initialize_real.f90:(.text+0x70fb2): undefined reference to `module_polarfft_mp_pxft_'
libwrflib.a(module_dm.o): In function `feedback_domain_em_part2_':
module_dm.f90:(.text+0x1f1eac): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2051): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f21f6): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f23de): undefined reference to `cd_feedback_mask_'
module_dm.f90:(.text+0x1f2677): undefined reference to `cd_feedback_mask_'
libwrflib.a(module_dm.o):module_dm.f90:(.text+0x1f2909): more undefined references to `cd_feedback_mask_' follow
libwrflib.a(init_modules.o): In function `init_modules_':
init_modules.f90:(.text+0x2d): undefined reference to `init_modules_em_'
libwrflib.a(start_domain.o): In function `start_domain_':
start_domain.f90:(.text+0x985): undefined reference to `start_domain_em_'
0.31user 0.56system 0:01.46elapsed 59%CPU (0avgtext+0avgdata 58688maxresident)k
0inputs+59656outputs (0major+66295minor)pagefaults 0swaps
make[1]: [em_real] Error 1 (ignored)
make[1]: Leaving directory `/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main'
( cd test/em_real ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . )
if [ 0 -eq 1 ] ; then \
( cd main ; make -i -r MODULE_DIRS="-I../dyn_em -I../dyn_nmm -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/esmf_time_f90 -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/main -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_netcdf -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/external/io_int -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/frame -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/share -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/phys -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/chem -I/mnt/pan2/projects/nrtrr/alexander/code/rapidrefresh/rapid-refresh/WRFV3.8_GSD_hybridcoord/inc -I/apps/netcdf/3.6.3-intel/include " SOLVER=em IDEAL_CASE=real em_wrf_SST_ESMF ) ; \
( cd test/em_esmf_exp ; /bin/rm -f wrf.exe ; ln -s ../../main/wrf.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f wrf_SST_ESMF.exe ; ln -s ../../main/wrf_SST_ESMF.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA . ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ; \
ln -sf ../../run/RRTM_DATA . ; \
ln -sf ../../run/RRTMG_LW_DATA . ; \
ln -sf ../../run/RRTMG_SW_DATA . ; \
ln -sf ../../run/CAM_ABS_DATA . ; \
ln -sf ../../run/CAM_AEROPT_DATA . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A2 . ; \
ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_DRDSDT0_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_KAPPA_DATA . ; \
ln -sf ../../run/CLM_TAU_DATA . ; \
ln -sf ../../run/ozone.formatted . ; \
ln -sf ../../run/ozone_lat.formatted . ; \
ln -sf ../../run/ozone_plev.formatted . ; \
ln -sf ../../run/aerosol.formatted . ; \
ln -sf ../../run/aerosol_lat.formatted . ; \
ln -sf ../../run/aerosol_lon.formatted . ; \
ln -sf ../../run/aerosol_plev.formatted . ; \
ln -sf ../../run/CCN_ACTIVATE.BIN . ; \
if [ 4 -eq 8 ] ; then \
ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ; \
ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ; \
ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ; \
ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ; \
fi ) ; \
( cd test/em_esmf_exp ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . ) ; \
( cd test/em_esmf_exp ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . ) ; \
fi
( cd test/em_real ; /bin/rm -f real.exe ; ln -s ../../main/real.exe . )
( cd test/em_real ; /bin/rm -f tc.exe ; ln -s ../../main/tc.exe . )
( cd test/em_real ; /bin/rm -f ndown.exe ; ln -s ../../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd test/em_real ; /bin/rm -f nup.exe ; ln -s ../../main/nup.exe . )
( cd test/em_real ; /bin/rm -f README.namelist ; ln -s ../../run/README.namelist . )
( cd test/em_real ; /bin/rm -f ETAMPNEW_DATA.expanded_rain ETAMPNEW_DATA RRTM_DATA RRTMG_LW_DATA RRTMG_SW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA . ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain . ; \
ln -sf ../../run/RRTM_DATA . ; \
ln -sf ../../run/RRTMG_LW_DATA . ; \
ln -sf ../../run/RRTMG_SW_DATA . ; \
ln -sf ../../run/CAM_ABS_DATA . ; \
ln -sf ../../run/CAM_AEROPT_DATA . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP4.5 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP6 . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.RCP8.5 CAMtr_volume_mixing_ratio ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A1B . ; \
ln -sf ../../run/CAMtr_volume_mixing_ratio.A2 . ; \
ln -sf ../../run/CLM_ALB_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ALB_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_ASM_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_DRDSDT0_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DFS_DATA . ; \
ln -sf ../../run/CLM_EXT_ICE_DRC_DATA . ; \
ln -sf ../../run/CLM_KAPPA_DATA . ; \
ln -sf ../../run/CLM_TAU_DATA . ; \
ln -sf ../../run/ozone.formatted . ; \
ln -sf ../../run/ozone_lat.formatted . ; \
ln -sf ../../run/ozone_plev.formatted . ; \
ln -sf ../../run/aerosol.formatted . ; \
ln -sf ../../run/aerosol_lat.formatted . ; \
ln -sf ../../run/aerosol_lon.formatted . ; \
ln -sf ../../run/aerosol_plev.formatted . ; \
ln -sf ../../run/capacity.asc . ; \
ln -sf ../../run/coeff_p.asc . ; \
ln -sf ../../run/coeff_q.asc . ; \
ln -sf ../../run/constants.asc . ; \
ln -sf ../../run/masses.asc . ; \
ln -sf ../../run/termvels.asc . ; \
ln -sf ../../run/kernels.asc_s_0_03_0_9 . ; \
ln -sf ../../run/kernels_z.asc . ; \
ln -sf ../../run/bulkdens.asc_s_0_03_0_9 . ; \
ln -sf ../../run/bulkradii.asc_s_0_03_0_9 . ; \
ln -sf ../../run/CCN_ACTIVATE.BIN . ; \
if [ 4 -eq 8 ] ; then \
ln -sf ../../run/ETAMPNEW_DATA_DBL ETAMPNEW_DATA ; \
ln -sf ../../run/ETAMPNEW_DATA.expanded_rain_DBL ETAMPNEW_DATA.expanded_rain ; \
ln -sf ../../run/RRTM_DATA_DBL RRTM_DATA ; \
ln -sf ../../run/RRTMG_LW_DATA_DBL RRTMG_LW_DATA ; \
ln -sf ../../run/RRTMG_SW_DATA_DBL RRTMG_SW_DATA ; \
fi )
( cd test/em_real ; /bin/rm -f GENPARM.TBL ; ln -s ../../run/GENPARM.TBL . )
( cd test/em_real ; /bin/rm -f LANDUSE.TBL ; ln -s ../../run/LANDUSE.TBL . )
( cd test/em_real ; /bin/rm -f SOILPARM.TBL ; ln -s ../../run/SOILPARM.TBL . )
( cd test/em_real ; /bin/rm -f URBPARM.TBL ; ln -s ../../run/URBPARM.TBL . )
( cd test/em_real ; /bin/rm -f VEGPARM.TBL ; ln -s ../../run/VEGPARM.TBL . )
( cd test/em_real ; /bin/rm -f MPTABLE.TBL ; ln -s ../../run/MPTABLE.TBL . )
( cd test/em_real ; /bin/rm -f tr49t67 ; ln -s ../../run/tr49t67 . )
( cd test/em_real ; /bin/rm -f tr49t85 ; ln -s ../../run/tr49t85 . )
( cd test/em_real ; /bin/rm -f tr67t85 ; ln -s ../../run/tr67t85 . )
( cd test/em_real ; /bin/rm -f gribmap.txt ; ln -s ../../run/gribmap.txt . )
( cd test/em_real ; /bin/rm -f grib2map.tbl ; ln -s ../../run/grib2map.tbl . )
( cd run ; /bin/rm -f real.exe ; ln -s ../main/real.exe . )
( cd run ; /bin/rm -f tc.exe ; ln -s ../main/tc.exe . )
( cd run ; /bin/rm -f ndown.exe ; ln -s ../main/ndown.exe . )
#TEMPORARILY REMOVED ( cd run ; /bin/rm -f nup.exe ; ln -s ../main/nup.exe . )
( cd run ; if test -f namelist.input ; then \
/bin/cp -f namelist.input namelist.input.backup ; fi ; \
/bin/rm -f namelist.input ; cp ../test/em_real/namelist.input . )
==========================================================================
build started: Tue Oct 17 14:34:27 GMT 2017
build completed: Tue Oct 17 14:35:18 GMT 2017
---> Problems building executables, look for errors in the build log <---
==========================================================================