diff --git a/.github/workflows/pull_request.yml b/.github/workflows/pull_request.yml
index 091af95..26aa87a 100644
--- a/.github/workflows/pull_request.yml
+++ b/.github/workflows/pull_request.yml
@@ -162,6 +162,8 @@ jobs:
git fetch --all
git checkout $branch_name
git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
+ quarto --version
+ quarto check
shell: bash
# Run bookdown rendering
@@ -174,7 +176,9 @@ jobs:
- name: Render quarto version
id: quarto
if: ${{needs.yaml-check.outputs.toggle_website == 'quarto' }}
- run: Rscript -e "quarto::quarto_render('.')"
+ run: |
+ quarto::quarto_render('.')
+ shell: Rscript {0}
# This checks on the steps before it and makes sure that they completed.
# If the renders didn't complete we don't want to commit the file changes
diff --git a/_quarto.yml b/_quarto.yml
index 551ecd0..6bbbf4d 100644
--- a/_quarto.yml
+++ b/_quarto.yml
@@ -7,14 +7,13 @@ book:
author: Howard Baek
date: "4/3/2024"
favicon: img/favicon.ico
- bread-crumbs: false
page-navigation: true
search: true
repo-url: https://github.com/fhdsl/OTTR_Quarto
- repo-actions: [edit]
+ repo-actions: [edit]
issue-url: https://docs.google.com/forms/d/e/1FAIpQLSfBvVELBg8lcynKj0TrzMlov1zil-Sbkh9VhMKRcSpeo1xo6g/viewform
-
+
chapters:
- index.qmd
- intro.qmd
@@ -29,27 +28,27 @@ book:
- third-section-new-chapter.qmd
- conclusion.qmd
- references.qmd
-
- sidebar:
+
+ sidebar:
logo: "img/logo.png"
logo-href: "https://hutchdatascience.org/"
foreground: "#1B365D"
-
+
page-footer:
left: |
- This book was built with Quarto using
+ This book was built with Quarto using
OTTR.
center: |
All illustrations CC-BY.
All other materials CC-BY unless noted otherwise.
- right:
+ right:
- icon: github
href: https://github.com/
- icon: slack
href: https://fhdata.slack.com/join/signup#/domain-signup
-
+
bibliography: references.bib
@@ -60,17 +59,17 @@ format:
css: style.css
linkcolor: "#00C1D5"
mainfont: "Karla"
-
+
sidebar: true
toc: true
-
+
code-link: true
code-copy: true
-
+
link-external-newwindow: true
-
+
image: img/favicon.ico
license: "CC BY"
knitr:
opts_chunk:
- fig.path: "resources/images/figure/"
\ No newline at end of file
+ fig.path: "resources/images/figure/"
diff --git a/config_automation.yml b/config_automation.yml
index dab600b..e946aa4 100644
--- a/config_automation.yml
+++ b/config_automation.yml
@@ -25,4 +25,4 @@ render-coursera: no
# What docker image should be used for rendering?
# The default is jhudsl/base_ottr:latest
-rendering_docker_image: 'jhudsl/ottr_jupyter:latest'
+rendering-docker-image: 'jhudsl/ottr_jupyter:main'