diff --git a/09-student_guide.Rmd b/09-student_guide.Rmd
new file mode 100644
index 0000000..d6fff4a
--- /dev/null
+++ b/09-student_guide.Rmd
@@ -0,0 +1,10 @@
+
+# Student Guide
+
+## Activity One
+
+You might want to create a student guide that contains a different subset of Rmd files from your book, or renders to a different output format (e.g. word document). You can specify the output and Rmd files that will be used for the student guide using the `_output.yml` and `_bookdown.yml` files in the student-guide directory.
+
+## Activity Two
+
+Steps of the guide could go here.
\ No newline at end of file
diff --git a/docker/Dockerfile b/docker/Dockerfile
deleted file mode 100644
index 1c0c6e0..0000000
--- a/docker/Dockerfile
+++ /dev/null
@@ -1,78 +0,0 @@
-FROM rocker/tidyverse:4.0.2
-LABEL maintainer="cansav09@gmail.com"
-WORKDIR /rocker-build/
-
-COPY install_github.R .
-
-# Install apt-getable packages to start
-RUN apt-get update && apt-get install -y --no-install-recommends apt-utils dialog
-RUN apt-get install -y --no-install-recommends \
-    libxt6 \
-    libpoppler-cpp-dev \
-    vim \
-    libglpk40 \
-    curl \
-    gpg
-
-# Install gh
-RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | gpg --dearmor -o /usr/share/keyrings/githubcli-archive-keyring.gpg;
-RUN echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null;
-RUN apt update && apt install -y gh;
-
-# Remove old symlinks to old pandoc
-RUN unlink /usr/lib/rstudio-server/bin/pandoc/pandoc
-
-# Uninstall old version of pandoc
-RUN sudo apt-get purge pandoc pandoc-citeproc pandoc-data \
-  && sudo apt-get autoremove --purge
-
-# Install pandoc
-RUN wget https://github.com/jgm/pandoc/releases/download/2.14.1/pandoc-2.14.1-1-amd64.deb \
-  && sudo apt-get install ./pandoc-2.14.1-1-amd64.deb
-
-# Create new symlinks
-RUN ln -s /usr/bin/pandoc /usr/lib/rstudio-server/bin/pandoc/pandoc
-
-# Add curl, bzip2
-RUN apt-get update -qq && apt-get -y --no-install-recommends install \
-    bzip2 \
-    curl
-
-# Install pip3 and installation tools
-RUN apt-get -y --no-install-recommends install \
-    python3-pip  python3-dev
-
-# Commonly used R packages
-RUN Rscript -e  "options(warn = 2);install.packages( \
-    c('bookdown', \
-      'here', \
-      'leanpubr', \
-      'optparse', \
-      'oro.nifti', \
-      'qpdf', \
-      'R.utils', \
-      'rprojroot', \
-      'rgoogleslides', \
-      'servr', \
-      'spelling', \
-      'styler', \
-      'reticulate'), \
-      repos = 'https://cloud.r-project.org/')"
-
-# cow needs this dependency:
-RUN Rscript -e  "devtools::install_version('gitcreds', version = '0.1.1', repos = 'http://cran.us.r-project.org')"
-
-# Didactr needs this dependency:
-RUN Rscript -e  "devtools::install_version('lifecycle', version = '1.0.0', repos = 'http://cran.us.r-project.org')"
-
-# Copy over git token and package list
-COPY git_token.txt .
-COPY github_package_list.tsv .
-
-# Install packages from github
-RUN Rscript install_github.R \
-  --packages github_package_list.tsv \
-  --token git_token.txt
-
-# Set final workdir for commands
-WORKDIR /home/rstudio
diff --git a/docker/Dockerfile_ottrpal b/docker/Dockerfile_ottrpal
deleted file mode 100644
index 692e5b7..0000000
--- a/docker/Dockerfile_ottrpal
+++ /dev/null
@@ -1,29 +0,0 @@
-FROM jhudsl/course_template:main
-LABEL maintainer="cansav09@gmail.com"
-
-# Install apt-getable packages to start
-RUN apt-get update && apt-get install -y --no-install-recommends apt-utils dialog
-
-RUN apt-get install -y --no-install-recommends \
-    libxt6 \
-    libpoppler-cpp-dev \
-    vim \
-    libglpk40 \
-    curl \
-    gpg
-
-# Install R
-RUN apt-get update && apt-get install -y r-base curl
-
-# Install R packages
-RUN Rscript -e  "install.packages('curl')"
-
-# Install phantomjs
-RUN apt-get update && apt-get install build-essential chrpath libssl-dev libxft-dev -y \
-  && apt-get install libfontconfig1 libfontconfig1-dev -y \
-  && cd ~ && export PHANTOM_JS="phantomjs-2.1.1-linux-x86_64" \
-  && wget https://github.com/Medium/phantomjs/releases/download/v2.1.1/$PHANTOM_JS.tar.bz2 \
-  && sudo tar xvjf $PHANTOM_JS.tar.bz2 \
-  && sudo mv $PHANTOM_JS /usr/local/share \
-  && sudo ln -sf /usr/local/share/$PHANTOM_JS/bin/phantomjs /usr/local/bin \
-  && phantomjs --version
diff --git a/docker/github_package_list.tsv b/docker/github_package_list.tsv
deleted file mode 100644
index e587cda..0000000
--- a/docker/github_package_list.tsv
+++ /dev/null
@@ -1,10 +0,0 @@
-rstudio/rmarkdown	02d3c2512686fda9c14c2a0e300aa02525f16ca5
-yihui/xfun	74c2a6605d8f0fb19314da542baeead6dc8697d9
-yihui/knitr	a1052d12e0ff8f4ead365b4c85ef5835faa1c492
-r-lib/rlang	f0c9be5c5806b4e4b120b7516f286fef3c66bda5
-jhudsl/didactr	cde4598c10f2b5e2e31b47fe94ca1b02db420e10
-jhudsl/ottrpal	HEAD
-tidyverse/rvest	4fe39fb5089512d77b6a9cc026e5c895258ff6ce
-R-lib/testthat	e99155af85261e065192feb946dcfa6679cffae4
-rstudio/bookdown	88bc4ead8562ea281838041c795b38fc4a6a7165
-jhudsl/cow	HEAD
\ No newline at end of file
diff --git a/docker/install_github.R b/docker/install_github.R
deleted file mode 100644
index fb532ec..0000000
--- a/docker/install_github.R
+++ /dev/null
@@ -1,52 +0,0 @@
-#!/usr/bin/env Rscript
-
-if (!"optparse" %in% installed.packages()) {
-  install.packages("optparse")
-}
-
-library(optparse)
-
-################################ Set up options ################################
-# Set up optparse options
-option_list <- list(
-  make_option(
-    opt_str = c("-p", "--packages"), type = "character",
-    default = "github_package_list.tsv" ,
-    help = "Path to a TSV with a list of packages to be installed through Github, 
-    where file where the first column is the github package name e.g. 
-    jhudsl/ottrpal and the second column is the commit ID to be installed 
-    (to be supplied to the ref argument).
-    ",
-    metavar = "character"
-  ),
-  make_option(
-    opt_str = c("--token"), type = "character",
-    default = NULL,
-    help = "GITHUB PAT file",
-    metavar = "character"
-  )
-)
-
-# Parse options
-opt <- parse_args(OptionParser(option_list = option_list))
-
-# Read in the token
-token <- as.character(readLines(opt$token)[1])
-
-# Reset GITHUB PAT to be token
-Sys.unsetenv("GITHUB_PAT")
-Sys.setenv(GITHUB_PAT = token)
-
-# set up list of packages to install
-packages <- readr::read_tsv(opt$packages, 
-                                col_names = c("package_name", "ref"))
-
-purrr::pmap(
-  packages,
-  ~remotes::install_github(..1,
-                           auth_token = token,
-                           ref = ..2)
-                )
-
-# Remove the file after we are done
-file.remove(opt$token)
diff --git a/resources/TEMPLATE_Dockerfile b/resources/TEMPLATE_Dockerfile
deleted file mode 100644
index f68ae97..0000000
--- a/resources/TEMPLATE_Dockerfile
+++ /dev/null
@@ -1,20 +0,0 @@
-FROM jhudsl/course_template:main
-LABEL maintainer="your_email.com"
-
-#################### EXAMPLES OF INSTALLING PACKAGES ###########################
-# Install a Linux/Ubuntu package
-# RUN apt-get update && apt-get install -y --no-install-recommends \
-#    package_name
-
-# Install a package from CRAN
-# RUN Rscript -e  "options(warn = 2);install.packages( \
-#    c('package_name'), \
-#    repos = 'https://cloud.r-project.org/')"
-
-# Install a package from Bioconductor
-# RUN Rscript -e "options(warn = 2); BiocManager::install( \
-#    c('package_name')
-
-# Add a python package
-# RUN RUN pip3 install \
-#    "somepackage==0.1.0"
diff --git a/resources/exclude_files.txt b/resources/exclude_files.txt
new file mode 100644
index 0000000..5525a40
--- /dev/null
+++ b/resources/exclude_files.txt
@@ -0,0 +1,8 @@
+About.Rmd
+docs/*
+style-sets/*
+manuscript/*
+CONTRIBUTING.md
+LICENSE.md
+code_of_conduct.md
+README.md