From 80892fe99059c366315dacdfc634854b29da451f Mon Sep 17 00:00:00 2001 From: avahoffman Date: Thu, 30 Jan 2025 10:39:37 -0500 Subject: [PATCH] Update README.md --- README.md | 40 +++++++--------------------------------- 1 file changed, 7 insertions(+), 33 deletions(-) diff --git a/README.md b/README.md index 8e4bd8b..028f867 100644 --- a/README.md +++ b/README.md @@ -1,48 +1,22 @@ - - -## AnVIL Template - -Based on [_Open-source Tools for Training Resources (OTTR)_](https://github.com/jhudsl/OTTR_Template) - -The purpose of this template and is to make publishing maintenance for AnVIL content across multiple different platforms _less painful_. - -_This template helps you_: - -- Edit and write an AnVIL course in [RMarkdown files](https://rmarkdown.rstudio.com/) and have it published to multiple different platforms: - - [Leanpub](https://leanpub.com/bookstore?type=course) - - [Bookdown](https://bookdown.org/) - - [Coursera](https://www.coursera.org/) -- Have [Github action robots](https://github.com/jhudsl/OTTR_Template/wiki/How-to-set-up-and-customize-GitHub-actions-robots) do your repetitive tasks like spell check and re-rendering. -- Use [automagic conversion](https://github.com/jhudsl/ottrpal) to ease the lift of prepping the material for different platforms' formats. -- Use [our Docker image](https://hub.docker.com/repository/docker/jhudsl/course_template) for consistency across authors as well as to help you [avoid dependency hell](https://en.wikipedia.org/wiki/Dependency_hell). - - - -## To Get Started -- Go to the [OTTR Wiki page](https://github.com/jhudsl/OTTR_Template/wiki/Getting-started) -- Please take a look at the [code of conduct](./code_of_conduct.md). -- If you encounter any problems or have improvement ideas for this template repository, please [file an issue](https://github.com/jhudsl/AnVIL_bookdown_style/issues/new/choose)! Issues for the parent repository (the OTTR template repository) are also very much appreciated and can be submitted [here](https://github.com/jhudsl/OTTR_Template/issues/new/choose). - - - -# {Course Name} +# SRA Data on ANVIL [![Render Bookdown and Coursera](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml/badge.svg)](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml) This course was created from [the AnVIL Template](https://github.com/jhudsl/AnVIL_bookdown_style), which is based on [the OTTR Template](https://github.com/jhudsl/OTTR_Template) -You can see the rendered course material here: {Link to rendered bookdown and/or to the Leanpub. Will look something like: https://jhudatascience.org/{Course_Name}} +You can see the rendered course material here: https://hutchdatascience.org/AnVIL_SRA_Data/ ## About this course -This course introduces {info on what this course introduces} +This course helps AnVIL Users bring SRA data to ANVIL. ## Learning Objectives -This course will teach learners to: +This course will teach learners to: -- {You can use https://www.bobpikegroup.com/trainer-blog/5-steps-to-writing-clear-and-measurable-learning-objectives to define some learning objectives here} -- {More learning objectives} +- Use a WDL Workflow on AnVIL to bring in an example SRA accession. +- Use WDL to import multiple SRA accessions at once. +- Customize which SRA accessions will be brought to AnVIL. ## Encountering problems?