From ba36a5c49473209e7d6d9f5ff67ac72ab98f5e50 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" Date: Sun, 17 Nov 2024 03:20:44 +0000 Subject: [PATCH] Render course --- docs/Session-info.md | 2 +- docs/index.html | 2 +- docs/index.md | 2 +- docs/search_index.json | 2 +- docs/session-info.html | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/docs/Session-info.md b/docs/Session-info.md index 8a893de..e25d9b4 100644 --- a/docs/Session-info.md +++ b/docs/Session-info.md @@ -15,7 +15,7 @@ Below is software version information used to render this collection. ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC -## date 2024-11-10 +## date 2024-11-17 ## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown) ## ## ─ Packages ─────────────────────────────────────────────────────────────────── diff --git a/docs/index.html b/docs/index.html index 01660ae..cdecf27 100644 --- a/docs/index.html +++ b/docs/index.html @@ -160,7 +160,7 @@

AnVIL Collection

Courses and Guides

Please check out our full collection of AnVIL and related resources below!

-

This page was last updated on 2024-11-10 03:12:57.390445

+

This page was last updated on 2024-11-17 03:20:40.819233

AnVIL Resources

diff --git a/docs/index.md b/docs/index.md index 4d7a33c..455be51 100644 --- a/docs/index.md +++ b/docs/index.md @@ -13,7 +13,7 @@ favicon: assets/AnVIL_style/anvil_favicon.ico Please check out our full collection of AnVIL and related resources below! -This page was last updated on 2024-11-10 03:12:57.390445 +This page was last updated on 2024-11-17 03:20:40.819233 ## AnVIL Resources {-} diff --git a/docs/search_index.json b/docs/search_index.json index be76245..5123093 100644 --- a/docs/search_index.json +++ b/docs/search_index.json @@ -1 +1 @@ -[["index.html", "AnVIL Collection Courses and Guides AnVIL Resources GDSCN Resources", " AnVIL Collection Courses and Guides Please check out our full collection of AnVIL and related resources below! This page was last updated on 2024-11-10 03:12:57.390445 AnVIL Resources Book Name Description Topics AnVIL Champions One-stop resource for AnVIL Champions anvil, guide AnVIL CoFests! 2024 Information about AnVIL Community Conference CoFest Sessions - November 2024 anvil, conference, workshops AnVIL Demos ⏱ 30-minute demos and tutorials from our live AnVIL series anvil, cloud, cloud-computing, course, genomics, module, research AnVIL Instructor Guide A guide for instructors using AnVIL for workshops, lessons, or courses. anvil, course, education, guide AnVIL Urban Genomics: Identifying population structure among feral pigeon populations Lab module and lectures for exploring PCA using feral pigeon populations anvil, course, genomics, pca, urban-data-science AnVIL WDL Workflows Raw WDL workflow files for use on AnVIL and other platforms anvil, genomics, wdl, workflows AnVIL: SRA Data Pull Sequence Read Archive (SRA) data into AnVIL anvil, course, genomics, module, ncbi-database, sequence-read-archive AnVIL: Subsetting Your Data with WDL Tutorial for running the fastq_subsample WDL workflow on AnVIL! anvil, course, genomics, module, wdl, wdl-workflow, workflow Epigenetics on AnVIL: Nature vs Nurture An introductory activity for epigenetics, or the idea of \"nature versus nurture\" in genetics. Learners use the UCSC Genome Browser. anvil, course, epigenetics, human-genomes, module, ucsc-browser Getting Started on AnVIL A guide for getting started using AnVIL anvil, cloud-computing, course, genomics, guide Molecular Phylogenetic Techniques A semester-long course on the basics of molecular phylogenetic techniques anvil, course, phylogenetics, r-programming WDL Workflows Running and writing your first WDL workflow on AnVIL for absolute beginners. anvil, course, genomics, module, wdl, workflows GDSCN Resources Book Name Description Topics AnVIL Collection 📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects anvil, content-library, edtech-software, gdscn, website BioDIGS: Antimicrobial Resistance This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy. biodigs, course, gdscn, module BioDIGS: Biosynthetic Gene Clusters This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration of biosynthetic gene clusters in the BioDIGS samples using Galaxy biodigs, biosynthetic-gene-clusters, course, gdscn, metagenomics, module BioDIGS: Exploring Soil Data This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R. anvil, biodigs, course, gdscn, module BioDIGS: Getting Started Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS. anvil, biodigs, course, gdscn, r-programming, tutorial BioDIGSData Data Package for BioDIGS Project biodigs, edtech-software, gdscn GDSCN Book: SARS with Galaxy on AnVIL Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy anvil, course, gdscn, genomics, module, sars-cov-2, variant-detection GDSCN Book: SARS with RStudio on AnVIL Lab module and lectures for identifying phylogenetic history of SARS variants using R anvil, course, gdscn, module, phylogenetic-analysis, sars-cov-2 Intro R with swirl Lab exercise: learn basic R programming through interactive swirl lessons course, gdscn, module, swirl Statistics for Genomics: Differential Expression A set of lab modules for an introduction to differential gene expression anvil, cloud-computing, course, gdscn, gene-expression, genomics, module Statistics for Genomics: PCA A set of lab modules for PCA analysis anvil, course, gdscn, genomics, module, pca Statistics for Genomics: scRNAseq A set of lab modules for single cell RNA-seq analysis anvil, course, gdscn, module, rna-seq, scrna-seq "],["youtube-videos.html", "YouTube Videos AnVIL GDSCN", " YouTube Videos AnVIL Check out the AnVIL YouTube channel: https://www.youtube.com/@anvilproject1223 AnVIL “Shorts” (AnVIL in 2 minutes) Video Google Slides AnVIL for Analysts Go to slides AnVIL for Data Submitters Go to slides AnVIL for Lead Investigators Go to slides AnVIL for Instructors Go to slides Scalability on AnVIL Go to slides Discover tools & pipelines on AnVIL Go to slides Sharing on AnVIL Go to slides Reproducibility on AnVIL Go to slides Standardization on AnVIL Go to slides Migrate your tools & pipelines on AnVIL Go to slides Share tools & pipelines on AnVIL Go to slides Sequence Read Archive (SRA) data on AnVIL Go to slides Sharing on AnVIL for Instructors Go to slides NIH Data Management and Sharing on AnVIL Go to slides AnVIL Champions Go to slides AnVIL Getting Started Video Google Slides Why AnVIL? Go to slides Starting Jupyter on the AnVIL Platform Go to slides Starting RStudio on the AnVIL Platform Go to slides Starting Galaxy on the AnVIL Platform Go to slides Welcome to AnVIL! Portal homepage tour edition! #anvilproject #bioinformatics #cloudcomputing N/A Welcome to AnVIL! Getting Help edition! #anvilproject #bioinformatics #cloudcomputing N/A AnVIL Monthly Demos Video Google Slides AnVIL Demos: Introduction to AnVIL - 2023/03/23 N/A AnVIL Demos: Using the Human Pangenome on AnVIL - 2023/04/27 N/A AnVIL Demos: WARP Pipelines in AnVIL/Terra - 2023/05/18 N/A AnVIL Demos: How to combine data across workspaces - 06/22/2023 N/A AnVIL Demos: Interactive Genomic Data Science with Bioconductor - 07/20/2023 N/A AnVIL Demos: Running Galaxy in AnVIL - 08/31/2023 Go to slides AnVIL Demos: Epigenetics in AnVIL - 2023/09/21 Go to slides AnVIL Demos: DUOS - a tour of AnVIL’s innovative data sharing platform - 2023/10/26 N/A AnVIL Demos: Collecting and subsetting SRA data - 2023/12/14 N/A AnVIL Demos: Single Cell with Bioconductor - 2024/05/23 N/A AnVIL Demos: QC Analysis Pipeline from CCDG on AnVIL - 2024/06/20 N/A AnVIL Demos: Sharing Data in the AnVIL N/A AnVIL WDL Video Google Slides WDL Workflow Basics Go to slides Run Workflow Go to slides GDSCN Check out the GDSCN YouTube channel: https://www.youtube.com/@genomicdatasciencecommunit2514 SARS with Galaxy on AnVIL Video Google Slides Introduction to SARS-CoV-2 Variant Detection Go to slides What is a variant? Go to slides The sequencing revolution Go to slides Alignments & data structure Go to slides Cloud computing Go to slides AnVIL laboratory introduction Go to slides BioDIGS Soil Project Protocols Video Google Slides GDSCN Soil Sampling - Composite Sample Homogenization N/A GDSCN Soil Sampling - Preparing DNA Sample N/A GDSCN Soil Sampling - Preparing Heavy Metal Testing Sample N/A "],["contribute.html", "Contribute Courses and Guides AnVIL Shorts", " Contribute Courses and Guides What is needed to list my repository? The AnVIL Collection workflow uses three important things to add courses to the Collection. These are the repository description, homepage, and topics tags. Repositories must be set to public to be listed in the Collection. How often is the Collection updated? The collection is rendered nightly between 3am and 5am EST. How can I add my new course/content to the Collection? Your repository must be created under the jhudsl or fhdsl organizations and meet the above criteria. The repository must also have the tag anvil or gdscn. For repositories under other organizations, you can fork the repository into the jhudsl or fhdsl organizations. Example I want to use the raw Collection data! You can use the following link: https://raw.githubusercontent.com/fhdsl/AnVIL_Collection/main/resources/collection.tsv How do I edit description, homepage, and topics? Where to edit Start by clicking the gear button on the top right of the repository page on GitHub next to “About”. Where is the gear button next to the “About” menu? Edit repository description Enter a concise description, for example “A guide for instructors using AnVIL for workshops, lessons, or courses.” Add a description to the repository. Edit repository homepage Make sure you link to the website where your course is being rendered. For example, this repository links to https://jhudatascience.org/AnVIL_Book_Instructor_Guide. Add a homepage link to the repository. Edit repository topics Finally, you should add any relevant topics, as they will be listed in the Collection table! Add tags to the repository. AnVIL Shorts Make sure you add any AnVIL “Shorts” videos you create to this playlist! https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio In order for Google Slides to get linked correctly, please include the link somewhere in your video description. For example, you could include text like this: You can see the slides for this video here: https://docs.google.com/presentation/d/1IOOzvnKoTMJdRLFjCup_9FqQpumP07NwoBb9mIlD7lM/edit?usp=sharing Make sure the slides are set to “Anyone with the link” is a “Viewer”. "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Technical Course Publishing Engineer and Maintainer Ava Hoffman Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottrpal) John Muschelli, Candace Savonen, Carrie Wright "],["session-info.html", "Session Info", " Session Info Below is software version information used to render this collection. ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.3.2 (2023-10-31) ## os Ubuntu 22.04.4 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2024-11-10 ## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown) ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date (UTC) lib source ## bookdown 0.41 2024-10-16 [1] CRAN (R 4.3.2) ## bslib 0.6.1 2023-11-28 [1] RSPM (R 4.3.0) ## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0) ## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0) ## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0) ## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0) ## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0) ## evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0) ## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0) ## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0) ## glue 1.7.0 2024-01-09 [1] RSPM (R 4.3.0) ## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0) ## htmlwidgets 1.6.4 2023-12-06 [1] RSPM (R 4.3.0) ## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0) ## jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0) ## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0) ## knitr 1.48 2024-07-07 [1] CRAN (R 4.3.2) ## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0) ## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0) ## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0) ## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0) ## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0) ## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0) ## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0) ## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0) ## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0) ## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0) ## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0) ## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0) ## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0) ## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0) ## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2) ## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0) ## sass 0.4.8 2023-12-06 [1] RSPM (R 4.3.0) ## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0) ## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0) ## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0) ## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0) ## urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0) ## usethis 2.2.3 2024-02-19 [1] RSPM (R 4.3.0) ## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0) ## xfun 0.48 2024-10-03 [1] CRAN (R 4.3.2) ## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0) ## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library ## ## ────────────────────────────────────────────────────────────────────────────── "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] +[["index.html", "AnVIL Collection Courses and Guides AnVIL Resources GDSCN Resources", " AnVIL Collection Courses and Guides Please check out our full collection of AnVIL and related resources below! This page was last updated on 2024-11-17 03:20:40.819233 AnVIL Resources Book Name Description Topics AnVIL Champions One-stop resource for AnVIL Champions anvil, guide AnVIL CoFests! 2024 Information about AnVIL Community Conference CoFest Sessions - November 2024 anvil, conference, workshops AnVIL Demos ⏱ 30-minute demos and tutorials from our live AnVIL series anvil, cloud, cloud-computing, course, genomics, module, research AnVIL Instructor Guide A guide for instructors using AnVIL for workshops, lessons, or courses. anvil, course, education, guide AnVIL Urban Genomics: Identifying population structure among feral pigeon populations Lab module and lectures for exploring PCA using feral pigeon populations anvil, course, genomics, pca, urban-data-science AnVIL WDL Workflows Raw WDL workflow files for use on AnVIL and other platforms anvil, genomics, wdl, workflows AnVIL: SRA Data Pull Sequence Read Archive (SRA) data into AnVIL anvil, course, genomics, module, ncbi-database, sequence-read-archive AnVIL: Subsetting Your Data with WDL Tutorial for running the fastq_subsample WDL workflow on AnVIL! anvil, course, genomics, module, wdl, wdl-workflow, workflow Epigenetics on AnVIL: Nature vs Nurture An introductory activity for epigenetics, or the idea of \"nature versus nurture\" in genetics. Learners use the UCSC Genome Browser. anvil, course, epigenetics, human-genomes, module, ucsc-browser Getting Started on AnVIL A guide for getting started using AnVIL anvil, cloud-computing, course, genomics, guide Molecular Phylogenetic Techniques A semester-long course on the basics of molecular phylogenetic techniques anvil, course, phylogenetics, r-programming WDL Workflows Running and writing your first WDL workflow on AnVIL for absolute beginners. anvil, course, genomics, module, wdl, workflows GDSCN Resources Book Name Description Topics AnVIL Collection 📚 An auto-generating collection of all materials related to the AnVIL and GDSCN projects anvil, content-library, edtech-software, gdscn, website BioDIGS: Antimicrobial Resistance This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through an investigation of antimicrobial resistance in the BioDIGS samples using Galaxy. biodigs, course, gdscn, module BioDIGS: Biosynthetic Gene Clusters This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration of biosynthetic gene clusters in the BioDIGS samples using Galaxy biodigs, biosynthetic-gene-clusters, course, gdscn, metagenomics, module BioDIGS: Exploring Soil Data This is a BioDIGS in the Classroom companion guide for the BioDIGS project. This particular activity guides students through exploration and visualization of the soil characteristics data using R. anvil, biodigs, course, gdscn, module BioDIGS: Getting Started Getting started guide for using BioDIGS data in the classroom. Includes general information about BioDIGS. anvil, biodigs, course, gdscn, r-programming, tutorial BioDIGSData Data Package for BioDIGS Project biodigs, edtech-software, gdscn GDSCN Book: SARS with Galaxy on AnVIL Lab module and lectures for variant detection in SARS-CoV-2 using Galaxy anvil, course, gdscn, genomics, module, sars-cov-2, variant-detection GDSCN Book: SARS with RStudio on AnVIL Lab module and lectures for identifying phylogenetic history of SARS variants using R anvil, course, gdscn, module, phylogenetic-analysis, sars-cov-2 Intro R with swirl Lab exercise: learn basic R programming through interactive swirl lessons course, gdscn, module, swirl Statistics for Genomics: Differential Expression A set of lab modules for an introduction to differential gene expression anvil, cloud-computing, course, gdscn, gene-expression, genomics, module Statistics for Genomics: PCA A set of lab modules for PCA analysis anvil, course, gdscn, genomics, module, pca Statistics for Genomics: scRNAseq A set of lab modules for single cell RNA-seq analysis anvil, course, gdscn, module, rna-seq, scrna-seq "],["youtube-videos.html", "YouTube Videos AnVIL GDSCN", " YouTube Videos AnVIL Check out the AnVIL YouTube channel: https://www.youtube.com/@anvilproject1223 AnVIL “Shorts” (AnVIL in 2 minutes) Video Google Slides AnVIL for Analysts Go to slides AnVIL for Data Submitters Go to slides AnVIL for Lead Investigators Go to slides AnVIL for Instructors Go to slides Scalability on AnVIL Go to slides Discover tools & pipelines on AnVIL Go to slides Sharing on AnVIL Go to slides Reproducibility on AnVIL Go to slides Standardization on AnVIL Go to slides Migrate your tools & pipelines on AnVIL Go to slides Share tools & pipelines on AnVIL Go to slides Sequence Read Archive (SRA) data on AnVIL Go to slides Sharing on AnVIL for Instructors Go to slides NIH Data Management and Sharing on AnVIL Go to slides AnVIL Champions Go to slides AnVIL Getting Started Video Google Slides Why AnVIL? Go to slides Starting Jupyter on the AnVIL Platform Go to slides Starting RStudio on the AnVIL Platform Go to slides Starting Galaxy on the AnVIL Platform Go to slides Welcome to AnVIL! Portal homepage tour edition! #anvilproject #bioinformatics #cloudcomputing N/A Welcome to AnVIL! Getting Help edition! #anvilproject #bioinformatics #cloudcomputing N/A AnVIL Monthly Demos Video Google Slides AnVIL Demos: Introduction to AnVIL - 2023/03/23 N/A AnVIL Demos: Using the Human Pangenome on AnVIL - 2023/04/27 N/A AnVIL Demos: WARP Pipelines in AnVIL/Terra - 2023/05/18 N/A AnVIL Demos: How to combine data across workspaces - 06/22/2023 N/A AnVIL Demos: Interactive Genomic Data Science with Bioconductor - 07/20/2023 N/A AnVIL Demos: Running Galaxy in AnVIL - 08/31/2023 Go to slides AnVIL Demos: Epigenetics in AnVIL - 2023/09/21 Go to slides AnVIL Demos: DUOS - a tour of AnVIL’s innovative data sharing platform - 2023/10/26 N/A AnVIL Demos: Collecting and subsetting SRA data - 2023/12/14 N/A AnVIL Demos: Single Cell with Bioconductor - 2024/05/23 N/A AnVIL Demos: QC Analysis Pipeline from CCDG on AnVIL - 2024/06/20 N/A AnVIL Demos: Sharing Data in the AnVIL N/A AnVIL WDL Video Google Slides WDL Workflow Basics Go to slides Run Workflow Go to slides GDSCN Check out the GDSCN YouTube channel: https://www.youtube.com/@genomicdatasciencecommunit2514 SARS with Galaxy on AnVIL Video Google Slides Introduction to SARS-CoV-2 Variant Detection Go to slides What is a variant? Go to slides The sequencing revolution Go to slides Alignments & data structure Go to slides Cloud computing Go to slides AnVIL laboratory introduction Go to slides BioDIGS Soil Project Protocols Video Google Slides GDSCN Soil Sampling - Composite Sample Homogenization N/A GDSCN Soil Sampling - Preparing DNA Sample N/A GDSCN Soil Sampling - Preparing Heavy Metal Testing Sample N/A "],["contribute.html", "Contribute Courses and Guides AnVIL Shorts", " Contribute Courses and Guides What is needed to list my repository? The AnVIL Collection workflow uses three important things to add courses to the Collection. These are the repository description, homepage, and topics tags. Repositories must be set to public to be listed in the Collection. How often is the Collection updated? The collection is rendered nightly between 3am and 5am EST. How can I add my new course/content to the Collection? Your repository must be created under the jhudsl or fhdsl organizations and meet the above criteria. The repository must also have the tag anvil or gdscn. For repositories under other organizations, you can fork the repository into the jhudsl or fhdsl organizations. Example I want to use the raw Collection data! You can use the following link: https://raw.githubusercontent.com/fhdsl/AnVIL_Collection/main/resources/collection.tsv How do I edit description, homepage, and topics? Where to edit Start by clicking the gear button on the top right of the repository page on GitHub next to “About”. Where is the gear button next to the “About” menu? Edit repository description Enter a concise description, for example “A guide for instructors using AnVIL for workshops, lessons, or courses.” Add a description to the repository. Edit repository homepage Make sure you link to the website where your course is being rendered. For example, this repository links to https://jhudatascience.org/AnVIL_Book_Instructor_Guide. Add a homepage link to the repository. Edit repository topics Finally, you should add any relevant topics, as they will be listed in the Collection table! Add tags to the repository. AnVIL Shorts Make sure you add any AnVIL “Shorts” videos you create to this playlist! https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio In order for Google Slides to get linked correctly, please include the link somewhere in your video description. For example, you could include text like this: You can see the slides for this video here: https://docs.google.com/presentation/d/1IOOzvnKoTMJdRLFjCup_9FqQpumP07NwoBb9mIlD7lM/edit?usp=sharing Make sure the slides are set to “Anyone with the link” is a “Viewer”. "],["about-the-authors.html", "About the Authors", " About the Authors These credits are based on our course contributors table guidelines.     Credits Names Technical Course Publishing Engineer and Maintainer Ava Hoffman Template Publishing Engineers Candace Savonen, Carrie Wright Publishing Maintenance Engineer Candace Savonen Technical Publishing Stylists Carrie Wright, Candace Savonen Package Developers (ottrpal) John Muschelli, Candace Savonen, Carrie Wright "],["session-info.html", "Session Info", " Session Info Below is software version information used to render this collection. ## ─ Session info ─────────────────────────────────────────────────────────────── ## setting value ## version R version 4.3.2 (2023-10-31) ## os Ubuntu 22.04.4 LTS ## system x86_64, linux-gnu ## ui X11 ## language (EN) ## collate en_US.UTF-8 ## ctype en_US.UTF-8 ## tz Etc/UTC ## date 2024-11-17 ## pandoc 3.1.1 @ /usr/local/bin/ (via rmarkdown) ## ## ─ Packages ─────────────────────────────────────────────────────────────────── ## package * version date (UTC) lib source ## bookdown 0.41 2024-10-16 [1] CRAN (R 4.3.2) ## bslib 0.6.1 2023-11-28 [1] RSPM (R 4.3.0) ## cachem 1.0.8 2023-05-01 [1] RSPM (R 4.3.0) ## cli 3.6.2 2023-12-11 [1] RSPM (R 4.3.0) ## devtools 2.4.5 2022-10-11 [1] RSPM (R 4.3.0) ## digest 0.6.34 2024-01-11 [1] RSPM (R 4.3.0) ## ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.3.0) ## evaluate 0.23 2023-11-01 [1] RSPM (R 4.3.0) ## fastmap 1.1.1 2023-02-24 [1] RSPM (R 4.3.0) ## fs 1.6.3 2023-07-20 [1] RSPM (R 4.3.0) ## glue 1.7.0 2024-01-09 [1] RSPM (R 4.3.0) ## htmltools 0.5.7 2023-11-03 [1] RSPM (R 4.3.0) ## htmlwidgets 1.6.4 2023-12-06 [1] RSPM (R 4.3.0) ## httpuv 1.6.14 2024-01-26 [1] RSPM (R 4.3.0) ## jquerylib 0.1.4 2021-04-26 [1] RSPM (R 4.3.0) ## jsonlite 1.8.8 2023-12-04 [1] RSPM (R 4.3.0) ## knitr 1.48 2024-07-07 [1] CRAN (R 4.3.2) ## later 1.3.2 2023-12-06 [1] RSPM (R 4.3.0) ## lifecycle 1.0.4 2023-11-07 [1] RSPM (R 4.3.0) ## magrittr 2.0.3 2022-03-30 [1] RSPM (R 4.3.0) ## memoise 2.0.1 2021-11-26 [1] RSPM (R 4.3.0) ## mime 0.12 2021-09-28 [1] RSPM (R 4.3.0) ## miniUI 0.1.1.1 2018-05-18 [1] RSPM (R 4.3.0) ## pkgbuild 1.4.3 2023-12-10 [1] RSPM (R 4.3.0) ## pkgload 1.3.4 2024-01-16 [1] RSPM (R 4.3.0) ## profvis 0.3.8 2023-05-02 [1] RSPM (R 4.3.0) ## promises 1.2.1 2023-08-10 [1] RSPM (R 4.3.0) ## purrr 1.0.2 2023-08-10 [1] RSPM (R 4.3.0) ## R6 2.5.1 2021-08-19 [1] RSPM (R 4.3.0) ## Rcpp 1.0.12 2024-01-09 [1] RSPM (R 4.3.0) ## remotes 2.4.2.1 2023-07-18 [1] RSPM (R 4.3.0) ## rlang 1.1.4 2024-06-04 [1] CRAN (R 4.3.2) ## rmarkdown 2.25 2023-09-18 [1] RSPM (R 4.3.0) ## sass 0.4.8 2023-12-06 [1] RSPM (R 4.3.0) ## sessioninfo 1.2.2 2021-12-06 [1] RSPM (R 4.3.0) ## shiny 1.8.0 2023-11-17 [1] RSPM (R 4.3.0) ## stringi 1.8.3 2023-12-11 [1] RSPM (R 4.3.0) ## stringr 1.5.1 2023-11-14 [1] RSPM (R 4.3.0) ## urlchecker 1.0.1 2021-11-30 [1] RSPM (R 4.3.0) ## usethis 2.2.3 2024-02-19 [1] RSPM (R 4.3.0) ## vctrs 0.6.5 2023-12-01 [1] RSPM (R 4.3.0) ## xfun 0.48 2024-10-03 [1] CRAN (R 4.3.2) ## xtable 1.8-4 2019-04-21 [1] RSPM (R 4.3.0) ## yaml 2.3.8 2023-12-11 [1] RSPM (R 4.3.0) ## ## [1] /usr/local/lib/R/site-library ## [2] /usr/local/lib/R/library ## ## ────────────────────────────────────────────────────────────────────────────── "],["404.html", "Page not found", " Page not found The page you requested cannot be found (perhaps it was moved or renamed). You may want to try searching to find the page's new location, or use the table of contents to find the page you are looking for. "]] diff --git a/docs/session-info.html b/docs/session-info.html index 33bff16..16ecd40 100644 --- a/docs/session-info.html +++ b/docs/session-info.html @@ -167,7 +167,7 @@

Session Info