diff --git a/src/Patchwork.jl b/src/Patchwork.jl index b60779c..992408c 100644 --- a/src/Patchwork.jl +++ b/src/Patchwork.jl @@ -34,7 +34,6 @@ include("alignedregion.jl") include("alignedregioncollection.jl") include("alignment.jl") include("filtering.jl") -include("alignment.jl") include("alignmentconcatenation.jl") include("checkinput.jl") include("output.jl") @@ -42,6 +41,7 @@ include("plotting.jl") include("sliding.jl") include("clustering.jl") +# This list of exports lists the API export # types SequenceIdentifier, @@ -120,7 +120,7 @@ const DIAMONDOUTPUT = "diamond_out" const STATSOUTPUT = "sequence_stats" const PLOTSOUTPUT = "plots" const RULER = repeat('─', 74) -const VERSION = "0.6.7" +const VERSION = "0.6.8" # Default scoremodel taken from DIAMOND's defaults for BLOSUM62 const DEFAULT_SCOREMODEL = BioAlignments.AffineGapScoreModel(BioAlignments.BLOSUM62, gap_open = -11, gap_extend = -1)