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Landis-log.txt
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2022-11-18 20:45:22,555 - LANDIS-II 7.0 (7)
2022-11-18 20:45:22,561 -
2022-11-18 20:45:23,399 - Loading scenario from file "scenario_s1e1.txt" ...
2022-11-18 20:45:23,475 - Initialized random number generator with seed = 823,851,965
2022-11-18 20:45:23,475 - Loading species data from file "./species_s1e1.txt" ...
2022-11-18 20:45:23,509 - Loading ecoregions from file "./ecoregions_s1e1.txt" ...
2022-11-18 20:45:23,539 - Initializing landscape from ecoregions map "./ecoregions_s1e1.gis" ...
2022-11-18 20:45:23,607 - Cell length = 100 m, cell area = 1 ha
2022-11-18 20:45:23,609 - Map dimensions: 99 rows by 99 columns = 9,801 cells
2022-11-18 20:45:23,618 - Sites: 9,801 active (100.0%), 0 inactive (0.0%)
2022-11-18 20:45:23,626 - Loading Age-only Succession extension ...
2022-11-18 20:45:23,664 - Registering Data: Succession.AgeCohorts.
2022-11-18 20:45:23,666 - Loading dynamic input data from file "./age-only-succession_DynamicInputs_s1e1.txt" ...
2022-11-18 20:45:23,687 - Dynamic Input Parser: Add new year = 0.
2022-11-18 20:45:23,705 - Registering Data: TimeOfLastSuccession.
2022-11-18 20:45:23,705 - Registering Data: Shade.
2022-11-18 20:45:23,706 - Creating Dispersal Neighborhood List.
2022-11-18 20:45:23,707 - Dispersal: NeighborRadius=5050, CellLength=100, numCellRadius=50
2022-11-18 20:45:23,724 - Loading initial communities from file "./age-only-succession_InitialCommunities_s1e1.txt" ...
2022-11-18 20:45:23,752 - Reading initial communities map "./age-only-succession_InitialCommunities_s1e1.gis" ...
2022-11-18 20:45:23,846 - Loading Base Fire extension ...
2022-11-18 20:45:23,851 - Registering Data: Fire.Severity.
2022-11-18 20:45:23,851 - Registering Data: Fire.TimeOfLastEvent.
2022-11-18 20:45:23,919 - Loading FireRegion data...
2022-11-18 20:45:23,948 - Opening and Initializing Fire log files "fire/base-fire-log.csv" and "fire/base-fire-summary-log.csv"...
2022-11-18 20:45:24,017 - Generating event table...
2022-11-18 20:45:24,023 - Generating summary table...
2022-11-18 20:45:24,102 - Loading Output Max Species Age extension ...
2022-11-18 20:45:24,159 - Using the following extensions ...
Extension Name Extension Filename
-------------- ------------------
Age-only Succession age-only-succession_SetUp_s1e1.txt
Base Fire base-fire_SetUp_s1e1.txt
Output Max Species Age output_MaxSppAge.txt
2022-11-18 20:45:24,160 - Running Output Max Species Age ...
2022-11-18 20:45:24,163 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-0.gis ...
2022-11-18 20:45:24,297 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-0.gis ...
2022-11-18 20:45:24,408 - Current time: 5
2022-11-18 20:45:24,408 - Running Base Fire ...
2022-11-18 20:45:24,410 - Processing landscape for Fire events ...
2022-11-18 20:45:25,012 - Running Age-only Succession ...
2022-11-18 20:45:25,397 - Running Output Max Species Age ...
2022-11-18 20:45:25,397 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-5.gis ...
2022-11-18 20:45:25,494 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-5.gis ...
2022-11-18 20:45:25,603 - Current time: 10
2022-11-18 20:45:25,603 - Running Base Fire ...
2022-11-18 20:45:25,603 - Processing landscape for Fire events ...
2022-11-18 20:45:26,047 - Running Age-only Succession ...
2022-11-18 20:45:27,292 - Running Output Max Species Age ...
2022-11-18 20:45:27,292 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-10.gis ...
2022-11-18 20:45:27,393 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-10.gis ...
2022-11-18 20:45:27,508 - Current time: 15
2022-11-18 20:45:27,508 - Running Base Fire ...
2022-11-18 20:45:27,508 - Processing landscape for Fire events ...
2022-11-18 20:45:27,806 - Running Age-only Succession ...
2022-11-18 20:45:28,412 - Running Output Max Species Age ...
2022-11-18 20:45:28,412 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-15.gis ...
2022-11-18 20:45:28,507 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-15.gis ...
2022-11-18 20:45:28,617 - Current time: 20
2022-11-18 20:45:28,617 - Running Base Fire ...
2022-11-18 20:45:28,617 - Processing landscape for Fire events ...
2022-11-18 20:45:28,997 - Running Age-only Succession ...
2022-11-18 20:45:30,347 - Running Output Max Species Age ...
2022-11-18 20:45:30,347 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-20.gis ...
2022-11-18 20:45:30,444 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-20.gis ...
2022-11-18 20:45:30,550 - Current time: 25
2022-11-18 20:45:30,550 - Running Base Fire ...
2022-11-18 20:45:30,550 - Processing landscape for Fire events ...
2022-11-18 20:45:30,850 - Running Age-only Succession ...
2022-11-18 20:45:31,163 - Running Output Max Species Age ...
2022-11-18 20:45:31,163 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-25.gis ...
2022-11-18 20:45:31,258 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-25.gis ...
2022-11-18 20:45:31,362 - Current time: 30
2022-11-18 20:45:31,362 - Running Base Fire ...
2022-11-18 20:45:31,362 - Processing landscape for Fire events ...
2022-11-18 20:45:31,752 - Running Age-only Succession ...
2022-11-18 20:45:32,908 - Running Output Max Species Age ...
2022-11-18 20:45:32,908 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-30.gis ...
2022-11-18 20:45:33,008 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-30.gis ...
2022-11-18 20:45:33,118 - Current time: 35
2022-11-18 20:45:33,118 - Running Base Fire ...
2022-11-18 20:45:33,118 - Processing landscape for Fire events ...
2022-11-18 20:45:33,437 - Running Age-only Succession ...
2022-11-18 20:45:33,605 - Running Output Max Species Age ...
2022-11-18 20:45:33,605 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-35.gis ...
2022-11-18 20:45:33,700 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-35.gis ...
2022-11-18 20:45:33,806 - Current time: 40
2022-11-18 20:45:33,806 - Running Base Fire ...
2022-11-18 20:45:33,806 - Processing landscape for Fire events ...
2022-11-18 20:45:34,187 - Running Age-only Succession ...
2022-11-18 20:45:34,943 - Running Output Max Species Age ...
2022-11-18 20:45:34,943 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-40.gis ...
2022-11-18 20:45:35,041 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-40.gis ...
2022-11-18 20:45:35,140 - Current time: 45
2022-11-18 20:45:35,140 - Running Base Fire ...
2022-11-18 20:45:35,140 - Processing landscape for Fire events ...
2022-11-18 20:45:35,514 - Running Age-only Succession ...
2022-11-18 20:45:36,003 - Running Output Max Species Age ...
2022-11-18 20:45:36,003 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-45.gis ...
2022-11-18 20:45:36,101 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-45.gis ...
2022-11-18 20:45:36,208 - Current time: 50
2022-11-18 20:45:36,208 - Running Base Fire ...
2022-11-18 20:45:36,208 - Processing landscape for Fire events ...
2022-11-18 20:45:36,466 - Running Age-only Succession ...
2022-11-18 20:45:37,292 - Running Output Max Species Age ...
2022-11-18 20:45:37,292 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-50.gis ...
2022-11-18 20:45:37,396 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-50.gis ...
2022-11-18 20:45:37,495 - Current time: 55
2022-11-18 20:45:37,495 - Running Base Fire ...
2022-11-18 20:45:37,495 - Processing landscape for Fire events ...
2022-11-18 20:45:37,853 - Running Age-only Succession ...
2022-11-18 20:45:38,180 - Running Output Max Species Age ...
2022-11-18 20:45:38,180 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-55.gis ...
2022-11-18 20:45:38,283 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-55.gis ...
2022-11-18 20:45:38,382 - Current time: 60
2022-11-18 20:45:38,382 - Running Base Fire ...
2022-11-18 20:45:38,382 - Processing landscape for Fire events ...
2022-11-18 20:45:38,804 - Running Age-only Succession ...
2022-11-18 20:45:39,612 - Running Output Max Species Age ...
2022-11-18 20:45:39,612 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-60.gis ...
2022-11-18 20:45:39,709 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-60.gis ...
2022-11-18 20:45:39,809 - Current time: 65
2022-11-18 20:45:39,809 - Running Base Fire ...
2022-11-18 20:45:39,809 - Processing landscape for Fire events ...
2022-11-18 20:45:40,173 - Running Age-only Succession ...
2022-11-18 20:45:40,451 - Running Output Max Species Age ...
2022-11-18 20:45:40,451 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-65.gis ...
2022-11-18 20:45:40,548 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-65.gis ...
2022-11-18 20:45:40,649 - Current time: 70
2022-11-18 20:45:40,649 - Running Base Fire ...
2022-11-18 20:45:40,649 - Processing landscape for Fire events ...
2022-11-18 20:45:41,024 - Running Age-only Succession ...
2022-11-18 20:45:41,758 - Running Output Max Species Age ...
2022-11-18 20:45:41,758 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-70.gis ...
2022-11-18 20:45:41,856 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-70.gis ...
2022-11-18 20:45:41,966 - Current time: 75
2022-11-18 20:45:41,966 - Running Base Fire ...
2022-11-18 20:45:41,966 - Processing landscape for Fire events ...
2022-11-18 20:45:42,479 - Running Age-only Succession ...
2022-11-18 20:45:42,803 - Running Output Max Species Age ...
2022-11-18 20:45:42,803 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-75.gis ...
2022-11-18 20:45:42,899 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-75.gis ...
2022-11-18 20:45:43,006 - Current time: 80
2022-11-18 20:45:43,006 - Running Base Fire ...
2022-11-18 20:45:43,006 - Processing landscape for Fire events ...
2022-11-18 20:45:43,370 - Running Age-only Succession ...
2022-11-18 20:45:43,991 - Running Output Max Species Age ...
2022-11-18 20:45:43,991 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-80.gis ...
2022-11-18 20:45:44,090 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-80.gis ...
2022-11-18 20:45:44,199 - Current time: 85
2022-11-18 20:45:44,200 - Running Base Fire ...
2022-11-18 20:45:44,200 - Processing landscape for Fire events ...
2022-11-18 20:45:44,672 - Running Age-only Succession ...
2022-11-18 20:45:44,883 - Running Output Max Species Age ...
2022-11-18 20:45:44,883 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-85.gis ...
2022-11-18 20:45:44,981 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-85.gis ...
2022-11-18 20:45:45,089 - Current time: 90
2022-11-18 20:45:45,090 - Running Base Fire ...
2022-11-18 20:45:45,090 - Processing landscape for Fire events ...
2022-11-18 20:45:45,507 - Running Age-only Succession ...
2022-11-18 20:45:46,147 - Running Output Max Species Age ...
2022-11-18 20:45:46,147 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-90.gis ...
2022-11-18 20:45:46,243 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-90.gis ...
2022-11-18 20:45:46,350 - Current time: 95
2022-11-18 20:45:46,350 - Running Base Fire ...
2022-11-18 20:45:46,350 - Processing landscape for Fire events ...
2022-11-18 20:45:46,748 - Running Age-only Succession ...
2022-11-18 20:45:47,270 - Running Output Max Species Age ...
2022-11-18 20:45:47,270 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-95.gis ...
2022-11-18 20:45:47,366 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-95.gis ...
2022-11-18 20:45:47,472 - Current time: 100
2022-11-18 20:45:47,472 - Running Base Fire ...
2022-11-18 20:45:47,472 - Processing landscape for Fire events ...
2022-11-18 20:45:47,772 - Running Age-only Succession ...
2022-11-18 20:45:48,531 - Running Output Max Species Age ...
2022-11-18 20:45:48,531 - Writing maximum age map for abiebals to outputs/max-age-selected-spp/abiebals-100.gis ...
2022-11-18 20:45:48,627 - Writing maximum age map for all species to outputs/max-age-selected-spp/AllSppMaxAge-100.gis ...
2022-11-18 20:45:48,735 - Model run is complete.