Releases: evolbioinfo/gotree
Releases · evolbioinfo/gotree
v0.2.2
- Added tests for gotree command line
- New command:
gotree download ncbitax
- Removed systematic initialization of bitsets
gotree annotate
can take an annoted tree as reference input to transfer annotations from one tree to another- Renamed command
gotree dlimage itol
togotree download itol
- Modified the example
v0.2.1
- Added command
gotree compute bipartitiontree
- Added closest internal node name for output of
compare edge
command - Changed
annotate
function to consider the tree as rooted - Added command compare distances
v0.2.0
- Branch lengths and supports are not in scientific format anymore
- Drawings
- Draw internal node labels
- Added circular layout
- Added highlight for highly supported branches
- Changed font size
- Change api to write on writers (not only files)
gotree compare tips
may take several compared trees- Corrected avg length and support computation
- Corrected Newick parser : When several trees in the input
- Added an error when set of tips are not the same between trees for support computation
- Changed api
- Classical bootstrap
- Changed api function names for reading trees
- Changed multi-tree file reading function
- Added documentation of almost all commands and api examples (
docs
folder) - Updated tests
v0.1.14-b
- Added
gotree draw
commands that draws trees in png, svg, and text formats. Two possible layouts : normal or radial/unrooted
v0.1.14-a
- Added command
gotree draw text
to print tree(s) in Ascii format - Added command
gotree subtree
to extract a subtree - Added an option to booster support
v0.1.13
- Added
--revert
option to prune - Added
--tipfile
option to prune - Corrected branch length/support precision in output trees
- Refactored booster support computation
- Added
gotree stats splits
command to print bipartitions/splits - Added
--binary
option togotree compare trees
command. It prints only true or false.
v0.1.12
- Added
--silent
option for support computation
v0.1.11
- Renamed bootstrap support measure
- Corrected
gotree stats
precision:%4f
to%8f
v0.1.10
- Corrected bootstrap support assignment after reroot and unroot
v0.1.10-alpha
- Tree reading functions are more generic (take readers)
- Added command
gotree upload itol
to upload trees to iTOL - Added command
gotree dlimage itol
to download tree images from iTOL - replaced command
gotree compare
bygotree compare trees
- replaced command
gotree difftips
bygotree compare tips