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Releases: evolbioinfo/gotree

v0.2.2

03 Jul 12:08
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  • Added tests for gotree command line
  • New command: gotree download ncbitax
  • Removed systematic initialization of bitsets
  • gotree annotate can take an annoted tree as reference input to transfer annotations from one tree to another
  • Renamed command gotree dlimage itol to gotree download itol
  • Modified the example

v0.2.1

09 Jun 13:11
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  • Added command gotree compute bipartitiontree
  • Added closest internal node name for output of compare edge command
  • Changed annotate function to consider the tree as rooted
  • Added command compare distances

v0.2.0

25 Apr 12:25
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  • Branch lengths and supports are not in scientific format anymore
  • Drawings
    • Draw internal node labels
    • Added circular layout
    • Added highlight for highly supported branches
    • Changed font size
    • Change api to write on writers (not only files)
  • gotree compare tips may take several compared trees
  • Corrected avg length and support computation
  • Corrected Newick parser : When several trees in the input
  • Added an error when set of tips are not the same between trees for support computation
  • Changed api
    • Classical bootstrap
    • Changed api function names for reading trees
    • Changed multi-tree file reading function
  • Added documentation of almost all commands and api examples (docs folder)
  • Updated tests

v0.1.14-b

04 Apr 09:34
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v0.1.14-b Pre-release
Pre-release
  • Added gotree draw commands that draws trees in png, svg, and text formats. Two possible layouts : normal or radial/unrooted

v0.1.14-a

31 Mar 12:59
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v0.1.14-a Pre-release
Pre-release
  • Added command gotree draw text to print tree(s) in Ascii format
  • Added command gotree subtree to extract a subtree
  • Added an option to booster support

v0.1.13

10 Mar 15:41
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  • Added --revert option to prune
  • Added --tipfile option to prune
  • Corrected branch length/support precision in output trees
  • Refactored booster support computation
  • Added gotree stats splits command to print bipartitions/splits
  • Added --binary option to gotree compare trees command. It prints only true or false.

v0.1.12

01 Mar 08:51
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  • Added --silent option for support computation

v0.1.11

22 Feb 11:12
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  • Renamed bootstrap support measure
  • Corrected gotree stats precision: %4f to %8f

v0.1.10

17 Feb 13:48
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  • Corrected bootstrap support assignment after reroot and unroot

v0.1.10-alpha

16 Feb 15:56
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v0.1.10-alpha Pre-release
Pre-release
  • Tree reading functions are more generic (take readers)
  • Added command gotree upload itol to upload trees to iTOL
  • Added command gotree dlimage itol to download tree images from iTOL
  • replaced command gotree compare by gotree compare trees
  • replaced command gotree difftips by gotree compare tips