From b4619c2e2aca13d4f8919d1593f7326b9bf68262 Mon Sep 17 00:00:00 2001 From: Frederic Lemoine Date: Fri, 22 Mar 2019 11:34:42 +0100 Subject: [PATCH] Transfered to evolbioinfo --- Makefile | 4 ++-- acr/acr_test.go | 4 ++-- acr/parsimony.go | 2 +- asr/parsimony.go | 4 ++-- cmd/acr.go | 6 +++--- cmd/annotate.go | 10 +++++----- cmd/asr.go | 8 ++++---- cmd/balancedtree.go | 4 ++-- cmd/bipartitiontree.go | 4 ++-- cmd/booster.go | 6 +++--- cmd/brlencut.go | 4 ++-- cmd/caterpillartree.go | 4 ++-- cmd/classical.go | 6 +++--- cmd/clearcomments.go | 4 ++-- cmd/clearlength.go | 4 ++-- cmd/clearsupport.go | 4 ++-- cmd/collapsebrlen.go | 4 ++-- cmd/collapsedepth.go | 4 ++-- cmd/collapsesingle.go | 4 ++-- cmd/collapsesupport.go | 4 ++-- cmd/comparedistances.go | 6 +++--- cmd/compareedges.go | 6 +++--- cmd/comparetips.go | 4 ++-- cmd/comparetrees.go | 4 ++-- cmd/computesupport.go | 2 +- cmd/consensus.go | 4 ++-- cmd/cyjs.go | 6 +++--- cmd/divide.go | 4 ++-- cmd/dlncbi.go | 6 +++--- cmd/edges.go | 4 ++-- cmd/edgetrees.go | 4 ++-- cmd/itoldl.go | 4 ++-- cmd/itolup.go | 6 +++--- cmd/matrix.go | 4 ++-- cmd/merge.go | 4 ++-- cmd/midpoint.go | 4 ++-- cmd/minbrlen.go | 4 ++-- cmd/multiplybrlen.go | 4 ++-- cmd/multiplybrsupport.go | 4 ++-- cmd/nodes.go | 4 ++-- cmd/outgroup.go | 4 ++-- cmd/png.go | 6 +++--- cmd/prune.go | 4 ++-- cmd/randbrlen.go | 4 ++-- cmd/randsupport.go | 4 ++-- cmd/reformatnewick.go | 4 ++-- cmd/reformatnexus.go | 6 +++--- cmd/reformatphyloxml.go | 6 +++--- cmd/rename.go | 4 ++-- cmd/resolve.go | 4 ++-- cmd/roccurve.go | 4 ++-- cmd/root.go | 6 +++--- cmd/rooted.go | 4 ++-- cmd/rotate_rand.go | 4 ++-- cmd/rotate_sort.go | 4 ++-- cmd/roundlengths.go | 4 ++-- cmd/roundsupport.go | 4 ++-- cmd/sample.go | 4 ++-- cmd/shuffletips.go | 4 ++-- cmd/splits.go | 4 ++-- cmd/stats.go | 4 ++-- cmd/subtree.go | 4 ++-- cmd/svg.go | 6 +++--- cmd/text.go | 6 +++--- cmd/tips.go | 4 ++-- cmd/topologies.go | 4 ++-- cmd/uniformtree.go | 4 ++-- cmd/unroot.go | 4 ++-- cmd/yuletree.go | 4 ++-- download/download.go | 2 +- download/ncbitax.go | 6 +++--- draw/circular.go | 2 +- draw/cytoscape.go | 2 +- draw/draw.go | 2 +- draw/normal.go | 2 +- draw/radial.go | 2 +- io/newick/newick_parser.go | 2 +- io/newick/newick_parser_test.go | 4 ++-- io/nexus/nexus.go | 2 +- io/nexus/nexus_lexer.go | 2 +- io/nexus/nexus_parser.go | 4 ++-- io/nexus/nexus_parser_test.go | 4 ++-- io/phyloxml/phyloxml.go | 2 +- io/utils/readfiles.go | 2 +- io/utils/readtrees.go | 10 +++++----- main.go | 2 +- support/booster.go | 4 ++-- support/classical.go | 2 +- support/support.go | 6 +++--- tests/algo_test.go | 4 ++-- tests/classical_test.go | 8 ++++---- tests/clone_test.go | 2 +- tests/collapse_test.go | 2 +- tests/consensus_test.go | 6 +++--- tests/edge_test.go | 4 ++-- tests/edgeindex_benchmark.go | 4 ++-- tests/edgeindex_test.go | 6 +++--- tests/gentree_test.go | 2 +- tests/quartets_test.go | 8 ++++---- tests/remove_tips_test.go | 2 +- tests/reroot_test.go | 2 +- tests/startree_test.go | 2 +- tests/tree_test.go | 4 ++-- tests/unroot_test.go | 2 +- tree/algo.go | 2 +- tree/edge.go | 4 ++-- tree/edgeindex.go | 4 ++-- tree/quartets.go | 4 ++-- tree/stats.go | 2 +- tree/tree.go | 4 ++-- tree/treegen.go | 2 +- upload/itol.go | 2 +- upload/upload.go | 2 +- 113 files changed, 229 insertions(+), 229 deletions(-) diff --git a/Makefile b/Makefile index eba9f63..5fdc2c9 100644 --- a/Makefile +++ b/Makefile @@ -2,9 +2,9 @@ DEP_EXECUTABLE := ${GOPATH}/bin/dep GO_EXECUTABLE := go VERSION := $(shell git describe --abbrev=10 --dirty --always --tags) DIST_DIRS := find * -type d -exec -VERSION_PACKAGE := github.com/fredericlemoine/gotree/cmd.Version +VERSION_PACKAGE := github.com/evolbioinfo/gotree/cmd.Version NAME := gotree -PACKAGE:=github.com/fredericlemoine/gotree +PACKAGE:=github.com/evolbioinfo/gotree all: dep build test diff --git a/acr/acr_test.go b/acr/acr_test.go index d66c507..02c50cd 100644 --- a/acr/acr_test.go +++ b/acr/acr_test.go @@ -5,8 +5,8 @@ import ( "strings" "testing" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/tree" ) func TestACRDELTRANParsimony(t *testing.T) { diff --git a/acr/parsimony.go b/acr/parsimony.go index 6ee68ef..a5d27c8 100644 --- a/acr/parsimony.go +++ b/acr/parsimony.go @@ -8,7 +8,7 @@ import ( "sort" "strings" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) const ( diff --git a/asr/parsimony.go b/asr/parsimony.go index eab903a..bd3aab9 100644 --- a/asr/parsimony.go +++ b/asr/parsimony.go @@ -7,8 +7,8 @@ import ( "math/rand" "github.com/fredericlemoine/goalign/align" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" ) const ( diff --git a/cmd/acr.go b/cmd/acr.go index f7c61f8..fc709d9 100644 --- a/cmd/acr.go +++ b/cmd/acr.go @@ -10,9 +10,9 @@ import ( "regexp" "strings" - "github.com/fredericlemoine/gotree/acr" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/acr" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/annotate.go b/cmd/annotate.go index 78a0829..a81b25a 100644 --- a/cmd/annotate.go +++ b/cmd/annotate.go @@ -9,11 +9,11 @@ import ( "os" "strings" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/io/fileutils" - "github.com/fredericlemoine/gotree/mutils" - "github.com/fredericlemoine/gotree/support" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/io/fileutils" + "github.com/evolbioinfo/gotree/mutils" + "github.com/evolbioinfo/gotree/support" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/asr.go b/cmd/asr.go index eb10676..5113395 100644 --- a/cmd/asr.go +++ b/cmd/asr.go @@ -10,10 +10,10 @@ import ( "github.com/fredericlemoine/goalign/align" "github.com/fredericlemoine/goalign/io/fasta" "github.com/fredericlemoine/goalign/io/phylip" - "github.com/fredericlemoine/gotree/asr" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/asr" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/balancedtree.go b/cmd/balancedtree.go index e79eaca..b1618de 100644 --- a/cmd/balancedtree.go +++ b/cmd/balancedtree.go @@ -3,8 +3,8 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/bipartitiontree.go b/cmd/bipartitiontree.go index 342c1a1..a7d0fb3 100644 --- a/cmd/bipartitiontree.go +++ b/cmd/bipartitiontree.go @@ -5,8 +5,8 @@ import ( "fmt" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/booster.go b/cmd/booster.go index e3aedd7..78e62db 100644 --- a/cmd/booster.go +++ b/cmd/booster.go @@ -5,9 +5,9 @@ import ( goio "io" "time" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/support" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/support" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/brlencut.go b/cmd/brlencut.go index c62c237..6fc6e42 100644 --- a/cmd/brlencut.go +++ b/cmd/brlencut.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/caterpillartree.go b/cmd/caterpillartree.go index bfdda9a..33d89d3 100644 --- a/cmd/caterpillartree.go +++ b/cmd/caterpillartree.go @@ -3,8 +3,8 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/classical.go b/cmd/classical.go index 6df3cf9..76b7c0e 100644 --- a/cmd/classical.go +++ b/cmd/classical.go @@ -19,9 +19,9 @@ import ( goio "io" "time" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/support" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/support" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/clearcomments.go b/cmd/clearcomments.go index b586591..8fd4b9c 100644 --- a/cmd/clearcomments.go +++ b/cmd/clearcomments.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/clearlength.go b/cmd/clearlength.go index e454d3c..7ff06ef 100644 --- a/cmd/clearlength.go +++ b/cmd/clearlength.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/clearsupport.go b/cmd/clearsupport.go index 3ee1e75..180fd05 100644 --- a/cmd/clearsupport.go +++ b/cmd/clearsupport.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/collapsebrlen.go b/cmd/collapsebrlen.go index 3b5e538..8bbbfb9 100644 --- a/cmd/collapsebrlen.go +++ b/cmd/collapsebrlen.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/collapsedepth.go b/cmd/collapsedepth.go index 848d592..34a2071 100644 --- a/cmd/collapsedepth.go +++ b/cmd/collapsedepth.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/collapsesingle.go b/cmd/collapsesingle.go index 31a02b6..8cb321c 100644 --- a/cmd/collapsesingle.go +++ b/cmd/collapsesingle.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/collapsesupport.go b/cmd/collapsesupport.go index 94eaf3c..51f0219 100644 --- a/cmd/collapsesupport.go +++ b/cmd/collapsesupport.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/comparedistances.go b/cmd/comparedistances.go index c5bb845..700a3db 100644 --- a/cmd/comparedistances.go +++ b/cmd/comparedistances.go @@ -6,9 +6,9 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/support" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/support" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/compareedges.go b/cmd/compareedges.go index 99ac78c..b5b33dd 100644 --- a/cmd/compareedges.go +++ b/cmd/compareedges.go @@ -7,9 +7,9 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/support" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/support" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/comparetips.go b/cmd/comparetips.go index 3ac7914..e51abc1 100644 --- a/cmd/comparetips.go +++ b/cmd/comparetips.go @@ -6,8 +6,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/comparetrees.go b/cmd/comparetrees.go index 5bae1d5..58b868f 100644 --- a/cmd/comparetrees.go +++ b/cmd/comparetrees.go @@ -7,8 +7,8 @@ import ( goio "io" "runtime" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" ) var comparetreeidentical bool diff --git a/cmd/computesupport.go b/cmd/computesupport.go index ef9a356..a4ae2c3 100644 --- a/cmd/computesupport.go +++ b/cmd/computesupport.go @@ -3,7 +3,7 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/io" + "github.com/evolbioinfo/gotree/io" "github.com/spf13/cobra" ) diff --git a/cmd/consensus.go b/cmd/consensus.go index dd5220d..fd985c7 100644 --- a/cmd/consensus.go +++ b/cmd/consensus.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/cyjs.go b/cmd/cyjs.go index 71b5706..22566b2 100644 --- a/cmd/cyjs.go +++ b/cmd/cyjs.go @@ -7,9 +7,9 @@ import ( "os" "path/filepath" - "github.com/fredericlemoine/gotree/draw" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/draw" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/divide.go b/cmd/divide.go index 50a3ed5..f94f629 100644 --- a/cmd/divide.go +++ b/cmd/divide.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/dlncbi.go b/cmd/dlncbi.go index a5a9d73..2d6674d 100644 --- a/cmd/dlncbi.go +++ b/cmd/dlncbi.go @@ -3,9 +3,9 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/download" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/download" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/edges.go b/cmd/edges.go index bf47c51..1cfd3de 100644 --- a/cmd/edges.go +++ b/cmd/edges.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/edgetrees.go b/cmd/edgetrees.go index dcbcdbe..0a1ebdb 100644 --- a/cmd/edgetrees.go +++ b/cmd/edgetrees.go @@ -6,8 +6,8 @@ import ( "os" "sync" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/itoldl.go b/cmd/itoldl.go index fb1a9b9..eceb064 100644 --- a/cmd/itoldl.go +++ b/cmd/itoldl.go @@ -4,8 +4,8 @@ import ( "errors" "io/ioutil" - "github.com/fredericlemoine/gotree/download" - "github.com/fredericlemoine/gotree/io" + "github.com/evolbioinfo/gotree/download" + "github.com/evolbioinfo/gotree/io" "github.com/spf13/cobra" ) diff --git a/cmd/itolup.go b/cmd/itolup.go index 83c26e9..e1efce3 100644 --- a/cmd/itolup.go +++ b/cmd/itolup.go @@ -6,9 +6,9 @@ import ( "os" "time" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" - "github.com/fredericlemoine/gotree/upload" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" + "github.com/evolbioinfo/gotree/upload" "github.com/spf13/cobra" ) diff --git a/cmd/matrix.go b/cmd/matrix.go index bfa0250..903f4de 100644 --- a/cmd/matrix.go +++ b/cmd/matrix.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/merge.go b/cmd/merge.go index 189b8f0..3e2f165 100644 --- a/cmd/merge.go +++ b/cmd/merge.go @@ -3,8 +3,8 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/midpoint.go b/cmd/midpoint.go index 2b6708e..60302a4 100644 --- a/cmd/midpoint.go +++ b/cmd/midpoint.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/minbrlen.go b/cmd/minbrlen.go index 9d4adb6..06cdd25 100644 --- a/cmd/minbrlen.go +++ b/cmd/minbrlen.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/multiplybrlen.go b/cmd/multiplybrlen.go index e0caf70..57886ce 100644 --- a/cmd/multiplybrlen.go +++ b/cmd/multiplybrlen.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/multiplybrsupport.go b/cmd/multiplybrsupport.go index 0ae3f76..f927bae 100644 --- a/cmd/multiplybrsupport.go +++ b/cmd/multiplybrsupport.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/nodes.go b/cmd/nodes.go index 6d3d8a0..b1f14f1 100644 --- a/cmd/nodes.go +++ b/cmd/nodes.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/outgroup.go b/cmd/outgroup.go index f8a4b94..c8ae584 100644 --- a/cmd/outgroup.go +++ b/cmd/outgroup.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/png.go b/cmd/png.go index 950bbcb..ef66f50 100644 --- a/cmd/png.go +++ b/cmd/png.go @@ -6,9 +6,9 @@ import ( "os" "path/filepath" - "github.com/fredericlemoine/gotree/draw" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/draw" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/prune.go b/cmd/prune.go index a1b739c..bad04b4 100644 --- a/cmd/prune.go +++ b/cmd/prune.go @@ -5,8 +5,8 @@ import ( "math/rand" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/randbrlen.go b/cmd/randbrlen.go index 6651ef0..1d51174 100644 --- a/cmd/randbrlen.go +++ b/cmd/randbrlen.go @@ -5,8 +5,8 @@ import ( "os" "github.com/fredericlemoine/gostats" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/randsupport.go b/cmd/randsupport.go index 150004c..e56b755 100644 --- a/cmd/randsupport.go +++ b/cmd/randsupport.go @@ -5,8 +5,8 @@ import ( "os" "github.com/fredericlemoine/gostats" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/reformatnewick.go b/cmd/reformatnewick.go index f2494e6..35be990 100644 --- a/cmd/reformatnewick.go +++ b/cmd/reformatnewick.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/reformatnexus.go b/cmd/reformatnexus.go index 5229454..036a02b 100644 --- a/cmd/reformatnexus.go +++ b/cmd/reformatnexus.go @@ -4,9 +4,9 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/io/nexus" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/io/nexus" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/reformatphyloxml.go b/cmd/reformatphyloxml.go index 9efd369..b01f3ac 100644 --- a/cmd/reformatphyloxml.go +++ b/cmd/reformatphyloxml.go @@ -4,9 +4,9 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/io/phyloxml" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/io/phyloxml" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/rename.go b/cmd/rename.go index cccff30..19b5808 100644 --- a/cmd/rename.go +++ b/cmd/rename.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/resolve.go b/cmd/resolve.go index 2aeb85c..2897249 100644 --- a/cmd/resolve.go +++ b/cmd/resolve.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/roccurve.go b/cmd/roccurve.go index 45d2518..c19e46e 100644 --- a/cmd/roccurve.go +++ b/cmd/roccurve.go @@ -5,8 +5,8 @@ import ( "os" "sync" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/root.go b/cmd/root.go index 6f3ea87..8ba95e0 100644 --- a/cmd/root.go +++ b/cmd/root.go @@ -14,9 +14,9 @@ import ( "time" "github.com/fredericlemoine/cobrashell" - "github.com/fredericlemoine/gotree/io/fileutils" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/fileutils" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/rooted.go b/cmd/rooted.go index 5cd6219..c135c9b 100644 --- a/cmd/rooted.go +++ b/cmd/rooted.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/rotate_rand.go b/cmd/rotate_rand.go index 1df3495..b830ecf 100644 --- a/cmd/rotate_rand.go +++ b/cmd/rotate_rand.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/rotate_sort.go b/cmd/rotate_sort.go index 9d35174..29e3a6d 100644 --- a/cmd/rotate_sort.go +++ b/cmd/rotate_sort.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/roundlengths.go b/cmd/roundlengths.go index 5bccc33..4fd3e0b 100644 --- a/cmd/roundlengths.go +++ b/cmd/roundlengths.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/roundsupport.go b/cmd/roundsupport.go index f75fee8..05f5674 100644 --- a/cmd/roundsupport.go +++ b/cmd/roundsupport.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/sample.go b/cmd/sample.go index dae0caf..f2f3100 100644 --- a/cmd/sample.go +++ b/cmd/sample.go @@ -5,8 +5,8 @@ import ( "math/rand" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/shuffletips.go b/cmd/shuffletips.go index 9652fad..67c271f 100644 --- a/cmd/shuffletips.go +++ b/cmd/shuffletips.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/splits.go b/cmd/splits.go index 1f0e3c5..f355e44 100644 --- a/cmd/splits.go +++ b/cmd/splits.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/stats.go b/cmd/stats.go index 923811a..e9377d5 100644 --- a/cmd/stats.go +++ b/cmd/stats.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/subtree.go b/cmd/subtree.go index 1e34aed..e029c2a 100644 --- a/cmd/subtree.go +++ b/cmd/subtree.go @@ -6,8 +6,8 @@ import ( "log" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/svg.go b/cmd/svg.go index f2eb8e6..4017f08 100644 --- a/cmd/svg.go +++ b/cmd/svg.go @@ -6,9 +6,9 @@ import ( "os" "path/filepath" - "github.com/fredericlemoine/gotree/draw" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/draw" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/text.go b/cmd/text.go index c046df6..f5df08c 100644 --- a/cmd/text.go +++ b/cmd/text.go @@ -4,9 +4,9 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/draw" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/draw" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/tips.go b/cmd/tips.go index 2aa7d89..a520bf2 100644 --- a/cmd/tips.go +++ b/cmd/tips.go @@ -5,8 +5,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/topologies.go b/cmd/topologies.go index 49d25f6..380fdd6 100644 --- a/cmd/topologies.go +++ b/cmd/topologies.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/uniformtree.go b/cmd/uniformtree.go index 1deb3de..72a051e 100644 --- a/cmd/uniformtree.go +++ b/cmd/uniformtree.go @@ -3,8 +3,8 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/unroot.go b/cmd/unroot.go index c87a530..220d83a 100644 --- a/cmd/unroot.go +++ b/cmd/unroot.go @@ -4,8 +4,8 @@ import ( goio "io" "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/cmd/yuletree.go b/cmd/yuletree.go index ffd07ce..aac7369 100644 --- a/cmd/yuletree.go +++ b/cmd/yuletree.go @@ -3,8 +3,8 @@ package cmd import ( "os" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" "github.com/spf13/cobra" ) diff --git a/download/download.go b/download/download.go index 7736d76..ad1bade 100644 --- a/download/download.go +++ b/download/download.go @@ -1,7 +1,7 @@ package download import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type ImageDownloader interface { diff --git a/download/ncbitax.go b/download/ncbitax.go index 78de13e..6272f2d 100644 --- a/download/ncbitax.go +++ b/download/ncbitax.go @@ -11,9 +11,9 @@ import ( "regexp" "strings" - gtio "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/io/fileutils" - "github.com/fredericlemoine/gotree/tree" + gtio "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/io/fileutils" + "github.com/evolbioinfo/gotree/tree" "github.com/jlaffaye/ftp" ) diff --git a/draw/circular.go b/draw/circular.go index 62d65c8..9367011 100644 --- a/draw/circular.go +++ b/draw/circular.go @@ -4,7 +4,7 @@ import ( "log" "math" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type circularLayout struct { diff --git a/draw/cytoscape.go b/draw/cytoscape.go index 05ab27a..0982f8d 100644 --- a/draw/cytoscape.go +++ b/draw/cytoscape.go @@ -4,7 +4,7 @@ import ( "bufio" "fmt" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type cytoscapeLayout struct { diff --git a/draw/draw.go b/draw/draw.go index 55b99b5..d1304f8 100644 --- a/draw/draw.go +++ b/draw/draw.go @@ -11,7 +11,7 @@ And with different drawing algorithms. So far, only ASCII form in terminal. package draw import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) /* diff --git a/draw/normal.go b/draw/normal.go index a3422db..97ef340 100644 --- a/draw/normal.go +++ b/draw/normal.go @@ -1,7 +1,7 @@ package draw import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type normalLayout struct { diff --git a/draw/radial.go b/draw/radial.go index 604ea40..c734f33 100644 --- a/draw/radial.go +++ b/draw/radial.go @@ -3,7 +3,7 @@ package draw import ( "math" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type radialLayout struct { diff --git a/io/newick/newick_parser.go b/io/newick/newick_parser.go index b077756..0a07ac2 100644 --- a/io/newick/newick_parser.go +++ b/io/newick/newick_parser.go @@ -3,7 +3,7 @@ package newick import ( "errors" "fmt" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" "io" "strconv" "strings" diff --git a/io/newick/newick_parser_test.go b/io/newick/newick_parser_test.go index acea84f..4be736c 100644 --- a/io/newick/newick_parser_test.go +++ b/io/newick/newick_parser_test.go @@ -3,8 +3,8 @@ package newick_test import ( "bufio" "fmt" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/tree" "os" "strings" "testing" diff --git a/io/nexus/nexus.go b/io/nexus/nexus.go index 7a1cb82..24ec46d 100644 --- a/io/nexus/nexus.go +++ b/io/nexus/nexus.go @@ -5,7 +5,7 @@ import ( "strconv" "github.com/fredericlemoine/goalign/align" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) // The nexus structure, with several trees (gotree) and one alignment (goalign) diff --git a/io/nexus/nexus_lexer.go b/io/nexus/nexus_lexer.go index 08edc79..0ed1c91 100644 --- a/io/nexus/nexus_lexer.go +++ b/io/nexus/nexus_lexer.go @@ -8,7 +8,7 @@ import ( "strconv" "strings" - treeio "github.com/fredericlemoine/gotree/io" + treeio "github.com/evolbioinfo/gotree/io" ) // Scanner represents a lexical scanner. diff --git a/io/nexus/nexus_parser.go b/io/nexus/nexus_parser.go index 6c05b1d..bfb1004 100644 --- a/io/nexus/nexus_parser.go +++ b/io/nexus/nexus_parser.go @@ -7,8 +7,8 @@ import ( "strings" "github.com/fredericlemoine/goalign/align" - treeio "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/io/newick" + treeio "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/io/newick" ) // Parser represents a parser. diff --git a/io/nexus/nexus_parser_test.go b/io/nexus/nexus_parser_test.go index 148cef5..17b6067 100644 --- a/io/nexus/nexus_parser_test.go +++ b/io/nexus/nexus_parser_test.go @@ -4,8 +4,8 @@ import ( "strings" "testing" - "github.com/fredericlemoine/gotree/io/nexus" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/nexus" + "github.com/evolbioinfo/gotree/tree" ) // Ensure the parser can parse strings into Statement ASTs. diff --git a/io/phyloxml/phyloxml.go b/io/phyloxml/phyloxml.go index c5fc128..7d6cb48 100644 --- a/io/phyloxml/phyloxml.go +++ b/io/phyloxml/phyloxml.go @@ -6,7 +6,7 @@ import ( "fmt" "io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) // Structs for representation of the PhyloXML tree diff --git a/io/utils/readfiles.go b/io/utils/readfiles.go index 2d9cec8..575ea84 100644 --- a/io/utils/readfiles.go +++ b/io/utils/readfiles.go @@ -12,7 +12,7 @@ import ( "os" "strings" - "github.com/fredericlemoine/gotree/download" + "github.com/evolbioinfo/gotree/download" ) func OpenFile(inputfile string) (*os.File, error) { diff --git a/io/utils/readtrees.go b/io/utils/readtrees.go index 685c3fa..46837e2 100644 --- a/io/utils/readtrees.go +++ b/io/utils/readtrees.go @@ -5,11 +5,11 @@ import ( "fmt" "strings" - "github.com/fredericlemoine/gotree/io/fileutils" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/io/nexus" - "github.com/fredericlemoine/gotree/io/phyloxml" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/fileutils" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/nexus" + "github.com/evolbioinfo/gotree/io/phyloxml" + "github.com/evolbioinfo/gotree/tree" ) const ( diff --git a/main.go b/main.go index 4944d17..35ac6a3 100644 --- a/main.go +++ b/main.go @@ -14,7 +14,7 @@ package main -import "github.com/fredericlemoine/gotree/cmd" +import "github.com/evolbioinfo/gotree/cmd" func main() { cmd.Execute() diff --git a/support/booster.go b/support/booster.go index 8f5d7da..c6d5b3a 100644 --- a/support/booster.go +++ b/support/booster.go @@ -8,8 +8,8 @@ import ( "os" "sync" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/tree" ) type BoosterSupporter struct { diff --git a/support/classical.go b/support/classical.go index f9a8b01..3fdb944 100644 --- a/support/classical.go +++ b/support/classical.go @@ -6,7 +6,7 @@ import ( "sync" "sync/atomic" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) /* diff --git a/support/support.go b/support/support.go index 1e171e5..a9b5d53 100644 --- a/support/support.go +++ b/support/support.go @@ -7,9 +7,9 @@ import ( "runtime" "sync" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/sort" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/sort" + "github.com/evolbioinfo/gotree/tree" ) type bootval struct { diff --git a/tests/algo_test.go b/tests/algo_test.go index f7e4aaa..b2d19f3 100644 --- a/tests/algo_test.go +++ b/tests/algo_test.go @@ -2,8 +2,8 @@ package tests import ( "fmt" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/tree" "os" "strings" "testing" diff --git a/tests/classical_test.go b/tests/classical_test.go index ade1fd9..ad38b98 100644 --- a/tests/classical_test.go +++ b/tests/classical_test.go @@ -6,10 +6,10 @@ import ( "io" "testing" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/support" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/support" + "github.com/evolbioinfo/gotree/tree" ) func TestClassicalSupport_1(t *testing.T) { diff --git a/tests/clone_test.go b/tests/clone_test.go index 57e7283..ebdd812 100644 --- a/tests/clone_test.go +++ b/tests/clone_test.go @@ -1,7 +1,7 @@ package tests import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" "testing" ) diff --git a/tests/collapse_test.go b/tests/collapse_test.go index 1f42e4d..e56eea4 100644 --- a/tests/collapse_test.go +++ b/tests/collapse_test.go @@ -2,7 +2,7 @@ package tests import ( "fmt" - "github.com/fredericlemoine/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/newick" "strings" "testing" ) diff --git a/tests/consensus_test.go b/tests/consensus_test.go index 894eb90..49e0f33 100644 --- a/tests/consensus_test.go +++ b/tests/consensus_test.go @@ -5,9 +5,9 @@ import ( "io" "testing" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/tree" ) /* diff --git a/tests/edge_test.go b/tests/edge_test.go index c500a6f..30a13b5 100644 --- a/tests/edge_test.go +++ b/tests/edge_test.go @@ -6,8 +6,8 @@ import ( "strings" "testing" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/tree" ) // Tests the function to get neighboring edges of a given edges diff --git a/tests/edgeindex_benchmark.go b/tests/edgeindex_benchmark.go index 21bf5c5..0c803d2 100644 --- a/tests/edgeindex_benchmark.go +++ b/tests/edgeindex_benchmark.go @@ -6,8 +6,8 @@ import ( "sync" "testing" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/tree" ) // Benchmark for reading 1000 bootstrap trees for example diff --git a/tests/edgeindex_test.go b/tests/edgeindex_test.go index 08481f5..cd56806 100644 --- a/tests/edgeindex_test.go +++ b/tests/edgeindex_test.go @@ -7,9 +7,9 @@ import ( "strings" "testing" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/tree" ) func TestEdgeIndex(t *testing.T) { diff --git a/tests/gentree_test.go b/tests/gentree_test.go index 0a97d16..a17dad7 100644 --- a/tests/gentree_test.go +++ b/tests/gentree_test.go @@ -1,7 +1,7 @@ package tests import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" "testing" ) diff --git a/tests/quartets_test.go b/tests/quartets_test.go index 15635e8..2038d20 100644 --- a/tests/quartets_test.go +++ b/tests/quartets_test.go @@ -6,10 +6,10 @@ import ( "io" "testing" - "github.com/fredericlemoine/gotree/hashmap" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/io/utils" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/hashmap" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/utils" + "github.com/evolbioinfo/gotree/tree" ) func TestQuartets(t *testing.T) { diff --git a/tests/remove_tips_test.go b/tests/remove_tips_test.go index 55c760f..1b9a043 100644 --- a/tests/remove_tips_test.go +++ b/tests/remove_tips_test.go @@ -1,7 +1,7 @@ package tests import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" "testing" ) diff --git a/tests/reroot_test.go b/tests/reroot_test.go index ffce3ec..6f26c9e 100644 --- a/tests/reroot_test.go +++ b/tests/reroot_test.go @@ -2,7 +2,7 @@ package tests import ( "fmt" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" "testing" ) diff --git a/tests/startree_test.go b/tests/startree_test.go index e0c34e6..8b4179e 100644 --- a/tests/startree_test.go +++ b/tests/startree_test.go @@ -2,7 +2,7 @@ package tests import ( "fmt" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" "os" "testing" ) diff --git a/tests/tree_test.go b/tests/tree_test.go index 295945a..54e803d 100644 --- a/tests/tree_test.go +++ b/tests/tree_test.go @@ -5,8 +5,8 @@ import ( "strings" "testing" - "github.com/fredericlemoine/gotree/io/newick" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/io/newick" + "github.com/evolbioinfo/gotree/tree" ) func TestClearLengths(t *testing.T) { diff --git a/tests/unroot_test.go b/tests/unroot_test.go index c251239..1fe5189 100644 --- a/tests/unroot_test.go +++ b/tests/unroot_test.go @@ -2,7 +2,7 @@ package tests import ( "fmt" - "github.com/fredericlemoine/gotree/io/newick" + "github.com/evolbioinfo/gotree/io/newick" "strings" "testing" ) diff --git a/tree/algo.go b/tree/algo.go index e4c6387..eb1519f 100644 --- a/tree/algo.go +++ b/tree/algo.go @@ -6,7 +6,7 @@ import ( "log" "sync" - "github.com/fredericlemoine/gotree/io" + "github.com/evolbioinfo/gotree/io" //"os" ) diff --git a/tree/edge.go b/tree/edge.go index 51cefab..d25ce29 100644 --- a/tree/edge.go +++ b/tree/edge.go @@ -8,8 +8,8 @@ import ( "strconv" "github.com/fredericlemoine/bitset" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/mutils" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/mutils" ) // Structure of an edge diff --git a/tree/edgeindex.go b/tree/edgeindex.go index b19b3ea..94f9533 100644 --- a/tree/edgeindex.go +++ b/tree/edgeindex.go @@ -4,8 +4,8 @@ import ( "errors" "github.com/fredericlemoine/bitset" - "github.com/fredericlemoine/gotree/hashmap" - "github.com/fredericlemoine/gotree/io" + "github.com/evolbioinfo/gotree/hashmap" + "github.com/evolbioinfo/gotree/io" ) // Structure for an EdgeIndex. diff --git a/tree/quartets.go b/tree/quartets.go index 9d2062c..4b90112 100644 --- a/tree/quartets.go +++ b/tree/quartets.go @@ -2,8 +2,8 @@ package tree import ( "errors" - "github.com/fredericlemoine/gotree/hashmap" - "github.com/fredericlemoine/gotree/io" + "github.com/evolbioinfo/gotree/hashmap" + "github.com/evolbioinfo/gotree/io" ) const ( diff --git a/tree/stats.go b/tree/stats.go index cfda118..606387f 100644 --- a/tree/stats.go +++ b/tree/stats.go @@ -5,7 +5,7 @@ import ( "math" "sort" - "github.com/fredericlemoine/gotree/mutils" + "github.com/evolbioinfo/gotree/mutils" ) const MaxInt = int(^uint(0) >> 1) diff --git a/tree/tree.go b/tree/tree.go index 339d41d..69b97ad 100644 --- a/tree/tree.go +++ b/tree/tree.go @@ -15,8 +15,8 @@ import ( "strconv" "github.com/fredericlemoine/bitset" - "github.com/fredericlemoine/gotree/io" - "github.com/fredericlemoine/gotree/mutils" + "github.com/evolbioinfo/gotree/io" + "github.com/evolbioinfo/gotree/mutils" ) // Tree structure having a root and a tip index, that maps tip names to their index diff --git a/tree/treegen.go b/tree/treegen.go index de930d7..48d718d 100644 --- a/tree/treegen.go +++ b/tree/treegen.go @@ -7,7 +7,7 @@ import ( "strconv" "github.com/fredericlemoine/gostats" - "github.com/fredericlemoine/gotree/io" + "github.com/evolbioinfo/gotree/io" ) // Creates a Random uniform Binary tree by successively adding diff --git a/upload/itol.go b/upload/itol.go index 55f96e6..62c379e 100644 --- a/upload/itol.go +++ b/upload/itol.go @@ -12,7 +12,7 @@ import ( "regexp" "strings" - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type ItolUploader struct { diff --git a/upload/upload.go b/upload/upload.go index 1b88266..e1be673 100644 --- a/upload/upload.go +++ b/upload/upload.go @@ -1,7 +1,7 @@ package upload import ( - "github.com/fredericlemoine/gotree/tree" + "github.com/evolbioinfo/gotree/tree" ) type Uploader interface {