This command reverse complements an input alignment.
package main
import (
"bufio"
"fmt"
"io"
"github.com/evolbioinfo/goalign/align"
"github.com/evolbioinfo/goalign/io/fasta"
"github.com/evolbioinfo/goalign/io/utils"
)
func main() {
var fi io.Closer
var r *bufio.Reader
var err error
var al align.Alignment
/* Get reader (plain text or gzip) */
fi, r, err = utils.GetReader("align.fa")
if err != nil {
panic(err)
}
/* Parse Fasta */
al, err = fasta.NewParser(r).Parse()
if err != nil {
panic(err)
}
fi.Close()
/* Translate */
if err = al.ReverseComplement(); err != nil {
panic(err)
} else {
fmt.Println(fasta.WriteAlignment(al))
}
}