-
Notifications
You must be signed in to change notification settings - Fork 5
Home
asperlea edited this page Feb 13, 2018
·
12 revisions
The tutorials below demonstrate the main ConsHMM functionalities.
Since ConsHMM was built on top of ChromHMM, we recommend referencing the ChromHMM User Manual for additional details regarding the underlying ChromHMM functions.
ConsHMM Segmentation Tutorial: how to learn a ConsHMM model and produce a segmentation from a multiple sequence alignment, demonstrated using the hg19 Multiz 100-alignment from the original ConsHMM paper.
External Enrichments Tutorial: how to compute the enrichment of the the states in a genome segmentation for other external annotations.