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train_a2c.py
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import argparse
import os
import numpy as np
import torch
from torch.utils.tensorboard import SummaryWriter
from tianshou.data import Collector, VectorReplayBuffer
from tianshou.env import DummyVectorEnv
from tianshou.policy import A2CPolicy, ImitationPolicy
from tianshou.trainer import offpolicy_trainer, onpolicy_trainer
from tianshou.utils import BasicLogger
from tianshou.utils.net.common import ActorCritic # , Net
from cryoEM_dataset import get_dataset
from cryoEM_env import CryoEMEnv
from cryoEM_config import *
from actor_critic import NetV3, ActorV2, CriticV2
import copy
from pathlib import Path
def get_args():
parser = argparse.ArgumentParser()
parser.add_argument('--task', type=str, default='CartPole-v0')
parser.add_argument('--dataset', type=str, default='CryoEM-5-5')
parser.add_argument('--seed', type=int, default=1)
parser.add_argument('--buffer-size', type=int, default=20000)
parser.add_argument('--lr', type=float, default=1e-3)
parser.add_argument('--il-lr', type=float, default=1e-3)
parser.add_argument('--gamma', type=float, default=0.9)
parser.add_argument('--epoch', type=int, default=20)
parser.add_argument('--step-per-epoch', type=int, default=10000)
parser.add_argument('--il-step-per-epoch', type=int, default=1000)
parser.add_argument('--episode-per-collect', type=int, default=16)
parser.add_argument('--step-per-collect', type=int, default=16)
parser.add_argument('--update-per-step', type=float, default=1 / 16)
parser.add_argument('--repeat-per-collect', type=int, default=1)
parser.add_argument('--batch-size', type=int, default=128)
parser.add_argument('--hidden-sizes', type=int, nargs='*', default=[128, 256, 128])
parser.add_argument('--imitation-hidden-sizes', type=int, nargs='*', default=[128])
parser.add_argument('--training-num', type=int, default=16)
parser.add_argument('--test-num', type=int, default=100)
parser.add_argument('--logdir', type=str, default='log')
parser.add_argument('--render', type=float, default=0.)
#parser.add_argument(
# '--device', type=str, default='cuda' if torch.cuda.is_available() else 'cpu'
#)
# a2c special
parser.add_argument('--vf-coef', type=float, default=0.5)
parser.add_argument('--ent-coef', type=float, default=0.0)
parser.add_argument('--max-grad-norm', type=float, default=None)
parser.add_argument('--gae-lambda', type=float, default=1.)
parser.add_argument('--rew-norm', action="store_true", default=False)
parser.add_argument('--n-step', type=int, default=3)
parser.add_argument('--target-update-freq', type=int, default=320)
parser.add_argument(
'--device', type=str,
default='cuda' if torch.cuda.is_available() else 'cpu')
parser.add_argument('--gpu', type=int, default=0)
parser.add_argument('--eval', action="store_true", default=False)
parser.add_argument('--print-trajectory', action="store_true", default=False)
parser.add_argument('--use-one-hot', action="store_true", default=False)
parser.add_argument('--train-prediction', action="store_true", default=False)
parser.add_argument('--use-penalty', action="store_true", default=False)
parser.add_argument('--prediction-type', type=str, default='classification')
parser.add_argument('--duration', type=float, default=120.0)
parser.add_argument('--ctf-thresh', type=float, default=6.0)
parser.add_argument('--action-elimination', action="store_true", default=False)
args = parser.parse_known_args()[0]
return args
def update_config(args):
if 'duration' in args:
CryoEMConfig.Searching_Limit = args.duration
print ('duration', CryoEMConfig.Searching_Limit)
if 'ctf_thresh' in args:
CryoEMConfig.LOW_CTF_THRESH = args.ctf_thresh
print ('low CTF threshold', CryoEMConfig.LOW_CTF_THRESH)
if 'feature_dim' in args:
CryoEMConfig.FEATURE_DIM = args.feature_dim
print ('feature dim', CryoEMConfig.FEATURE_DIM)
if 'hist_bins' in args:
CryoEMConfig.FEATURE_HISTOGRAM_BIN = args.hist_bins
print ('feature histogram bin', CryoEMConfig.FEATURE_HISTOGRAM_BIN)
def test_a2c_with_il(args=get_args()):
torch.set_num_threads(1) # for poor CPU
prediction_type = CryoEMConfig.CLASSIFICATION if args.prediction_type == 'classification' else CryoEMConfig.REGRESSION
train_dataset, val_dataset, feature_dim, category_bins = get_dataset(args.dataset,
#category_bins=[0,CryoEMConfig.LOW_CTF_THRESH, 99999],
prediction_type=prediction_type,
use_one_hot=args.use_one_hot)
# update configuration
args.feature_dim = feature_dim
args.hist_bins = category_bins
update_config(args)
# env = gym.make(args.task)
# args.state_shape = env.observation_space.shape or env.observation_space.n
# args.action_shape = env.action_space.shape or env.action_space.n
# you can also use tianshou.env.SubprocVectorEnv
# train_envs = gym.make(args.task)
train_envs = DummyVectorEnv([lambda: CryoEMEnv(copy.deepcopy(train_dataset),
id=k,
#history_size=CryoEMConfig.HISTORY_SIZE,
ctf_thresh=CryoEMConfig.LOW_CTF_THRESH,
#hist_bins=category_bins,
use_prediction=args.train_prediction,
action_elimination=args.action_elimination,
use_penalty=args.use_penalty) \
for k in range(args.training_num)])
# test_num set to 1 for evaluation
test_num = args.test_num if not args.eval else 1
test_envs = DummyVectorEnv([lambda: CryoEMEnv(copy.deepcopy(val_dataset),
id=k,
#history_size=CryoEMConfig.HISTORY_SIZE,
ctf_thresh=CryoEMConfig.LOW_CTF_THRESH,
#hist_bins=category_bins,
use_prediction=True,
action_elimination=args.action_elimination,
use_penalty=args.use_penalty,
evaluation=True,
print_trajectory=args.print_trajectory) \
for k in range(test_num)])
# seed
np.random.seed(args.seed)
torch.manual_seed(args.seed)
train_envs.seed(args.seed)
test_envs.seed(args.seed)
state_shape = CryoEMConfig.HISTORY_SIZE * CryoEMConfig.FEATURE_DIM
action_shape = 1
# model
print (args.hidden_sizes, state_shape)
net = NetV3(state_shape, hidden_sizes=args.hidden_sizes, device=args.device)
actor = ActorV2(net, action_shape, device=args.device).to(args.device)
critic = CriticV2(net, device=args.device).to(args.device)
optim = torch.optim.Adam(ActorCritic(actor, critic).parameters(), lr=args.lr)
dist = torch.distributions.Categorical
policy = A2CPolicy(
actor,
critic,
optim,
dist,
discount_factor=args.gamma,
gae_lambda=args.gae_lambda,
vf_coef=args.vf_coef,
ent_coef=args.ent_coef,
max_grad_norm=args.max_grad_norm,
reward_normalization=args.rew_norm,
action_space=train_envs.get_env_attr('action_space')[0]
)
# collector
train_collector = Collector(
policy, train_envs, VectorReplayBuffer(args.buffer_size, len(train_envs))
)
test_collector = Collector(policy, test_envs)
# log directory
model_dir = 'a2c{}'.format(args.hidden_sizes[0]) if args.hidden_sizes[0] != 128 else 'a2c' # 128 is default sizes
#if args.prioritized_replay:
# model_dir += '-replay'
model_dir += '-{}-train{}-test{}-step{}-e{}'.format(args.dataset, args.training_num, args.test_num, args.step_per_epoch, args.epoch)
model_dir += '-pred' if args.train_prediction else '-gt'
# model_dir += '-pred' if args.test_prediction else '-gt'
if prediction_type == CryoEMConfig.CLASSIFICATION:
model_dir += '-hard' if args.use_one_hot else '-soft'
else:
model_dir += '-regress'
model_dir += '-ctf{}'.format(int(args.ctf_thresh))
# if args.dynamic_reward:
# model_dir += '-dR'
# if args.use_penalty:
# model_dir += '-penalty'
log_path = os.path.join(args.logdir, model_dir)
Path(log_path).mkdir(parents=True, exist_ok=True)
writer = SummaryWriter(log_path)
logger = BasicLogger(writer)
def load_policy(ckpt_path, policy):
checkpoint = torch.load(ckpt_path, map_location=args.device)
policy.load_state_dict(checkpoint)
return policy
def save_fn(policy):
torch.save(policy.state_dict(), os.path.join(log_path, 'policy.pth'))
def stop_fn(mean_rewards):
return mean_rewards >= env.spec.reward_threshold
# evaluation
if args.eval:
policy = load_policy(os.path.join(log_path, 'policy.pth'), policy)
# policy.set_eps(args.eps_test)
policy.eval()
test_collector = Collector(policy, test_envs)
result = test_collector.collect(n_episode=50, render=args.render)
rews, lens = result["rews"], result["lens"]
print(f"Final reward: {rews.mean()} +/ {rews.std()}, length: {lens.mean()} +/ {lens.std()}")
return
# trainer
result = onpolicy_trainer(
policy,
train_collector,
test_collector,
args.epoch,
args.step_per_epoch,
args.repeat_per_collect,
args.test_num,
args.batch_size,
episode_per_collect=args.episode_per_collect,
#stop_fn=stop_fn,
save_fn=save_fn,
logger=logger
)
# assert stop_fn(result['best_reward'])
'''
if __name__ == '__main__':
pprint.pprint(result)
# Let's watch its performance!
env = gym.make(args.task)
policy.eval()
collector = Collector(policy, env)
result = collector.collect(n_episode=1, render=args.render)
rews, lens = result["rews"], result["lens"]
print(f"Final reward: {rews.mean()}, length: {lens.mean()}")
policy.eval()
# here we define an imitation collector with a trivial policy
if args.task == 'CartPole-v0':
env.spec.reward_threshold = 190 # lower the goal
net = NetV3(args.state_shape, hidden_sizes=args.hidden_sizes, device=args.device)
net = Actor(net, args.action_shape, device=args.device).to(args.device)
optim = torch.optim.Adam(net.parameters(), lr=args.il_lr)
il_policy = ImitationPolicy(net, optim, action_space=env.action_space)
il_test_collector = Collector(
il_policy,
DummyVectorEnv([lambda: gym.make(args.task) for _ in range(args.test_num)])
)
train_collector.reset()
result = offpolicy_trainer(
il_policy,
train_collector,
il_test_collector,
args.epoch,
args.il_step_per_epoch,
args.step_per_collect,
args.test_num,
args.batch_size,
stop_fn=stop_fn,
save_fn=save_fn,
logger=logger
)
assert stop_fn(result['best_reward'])
if __name__ == '__main__':
pprint.pprint(result)
# Let's watch its performance!
env = gym.make(args.task)
il_policy.eval()
collector = Collector(il_policy, env)
result = collector.collect(n_episode=1, render=args.render)
rews, lens = result["rews"], result["lens"]
print(f"Final reward: {rews.mean()}, length: {lens.mean()}")
'''
if __name__ == '__main__':
test_a2c_with_il()