From 0819207984d438f27159ad40b0e43d18bcacbcff Mon Sep 17 00:00:00 2001 From: Rohan Gupta Date: Sun, 5 Jun 2022 19:01:08 +0530 Subject: [PATCH] Update vcf files to include DP Format Header --- vcf2fhir/test/vcf_example1.vcf | 1 + vcf2fhir/test/vcf_example2.vcf | 1 + vcf2fhir/test/vcf_example4.vcf | 1 + vcf2fhir/test/vcftests.vcf | 1 + 4 files changed, 4 insertions(+) diff --git a/vcf2fhir/test/vcf_example1.vcf b/vcf2fhir/test/vcf_example1.vcf index 771dc9f..aa25030 100644 --- a/vcf2fhir/test/vcf_example1.vcf +++ b/vcf2fhir/test/vcf_example1.vcf @@ -1,4 +1,5 @@ ##fileformat=VCFv4.1 +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TEST001 1 15 . . G . . . GT:PS 0/1:. 1 16 . A,T G . . . GT:PS 0/1:. diff --git a/vcf2fhir/test/vcf_example2.vcf b/vcf2fhir/test/vcf_example2.vcf index 90dce1f..8cf2959 100644 --- a/vcf2fhir/test/vcf_example2.vcf +++ b/vcf2fhir/test/vcf_example2.vcf @@ -1,4 +1,5 @@ ##fileformat=VCFv4.1 +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 10 96448001 . T . . NS=1;CGA_WINEND=96450000 GT:CGA_GP:CGA_NP:CGA_CP:CGA_PS:CGA_CT:CGA_TS:CGA_CL:CGA_LS .:0.87:0.92:2:53:=:53:0.999:707 10 96448129 . A G . . NS=1;AN=2;AC=1;CGA_XR=dbsnp.92|rs1926706;CGA_FI=1562|NM_000772.2|CYP2C18|INTRON|UNKNOWN-INC&1562|NM_001128925.1|CYP2C18|INTRON|UNKNOWN-INC;CGA_RPT=L1MA4A|L1|18.5 GT:PS:FT:GQ:HQ:EHQ:CGA_CEHQ:GL:CGA_CEGL:DP:AD:CGA_RDP 1/0:.:PASS:238:355,238:354,238:53,50:-355,0,-238:-53,0,-50:34:18,16:16 diff --git a/vcf2fhir/test/vcf_example4.vcf b/vcf2fhir/test/vcf_example4.vcf index 811993d..df00b8a 100644 --- a/vcf2fhir/test/vcf_example4.vcf +++ b/vcf2fhir/test/vcf_example4.vcf @@ -1,4 +1,5 @@ ##fileformat=VCFv4.1 +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample X 60466 . T C . . NS=1 GT:PS:DP:AD:CGA_RDP 1|0:60454:48:17,31:31 X 60579 . G A . . NS=1 GT:PS:DP:AD:CGA_RDP 1|0:60579:47:24,23:23 diff --git a/vcf2fhir/test/vcftests.vcf b/vcf2fhir/test/vcftests.vcf index c003ae2..3e9e604 100644 --- a/vcf2fhir/test/vcftests.vcf +++ b/vcf2fhir/test/vcftests.vcf @@ -1,4 +1,5 @@ ##fileformat=VCFv4.1 +##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample X 60466 . T C . . NS=1 GT:PS:DP:AD:CGA_RDP 1|0:60454:48:17,31:31 X 60579 . G A . . NS=1 GT:PS:DP:AD:CGA_RDP 1|0:60579:47:24,23:23