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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>org.opencds.cqf.cql</groupId>
<artifactId>engine.shared</artifactId>
<version>1.5.5-SNAPSHOT</version>
<name>engine.shared</name>
<description>CQL Engine Project</description>
<url>https://github.com/DBCG/cql_engine/tree/master</url>
<packaging>pom</packaging>
<modules>
<module>engine</module>
<module>engine.fhir</module>
<module>engine.jaxb</module>
</modules>
<licenses>
<license>
<name>The Apache Software License, Version 2.0</name>
<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
</license>
</licenses>
<developers>
<developer>
<name>Bryn Rhodes</name>
</developer>
<developer>
<name>Chris Schuler</name>
</developer>
<developer>
<name>Jonathan Percival</name>
</developer>
</developers>
<scm>
<connection>scm:git:git://github.com/DBCG/cql_engine.git</connection>
<developerConnection>scm:git:ssh://github.com:DBCG/cql_engine.git</developerConnection>
<url>https://github.com/DBCG/cql_engine/tree/master</url>
</scm>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<jackson.version>2.13.1</jackson.version>
<cqframework.version>1.5.6</cqframework.version>
<hapi.version>5.6.2</hapi.version>
<slf4j.version>1.7.29</slf4j.version>
</properties>
<repositories>
<repository>
<id>oss-sonatype</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
<repository>
<id>oss-sonatype-public</id>
<url>https://oss.sonatype.org/content/groups/public/</url>
</repository>
</repositories>
<distributionManagement>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
</distributionManagement>
<dependencyManagement>
<dependencies>
<!-- JAXB related dependencies -->
<dependency>
<groupId>org.jvnet.jaxb2_commons</groupId>
<artifactId>jaxb2-basics</artifactId>
<version>0.12.0</version>
</dependency>
<dependency>
<groupId>org.eclipse.persistence</groupId>
<artifactId>org.eclipse.persistence.moxy</artifactId>
<version>2.7.7</version>
</dependency>
<!-- Jackson dependencies -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.module</groupId>
<artifactId>jackson-module-jaxb-annotations</artifactId>
<version>${jackson.version}</version>
</dependency>
<!-- UCUM related depedencies-->
<dependency>
<groupId>org.fhir</groupId>
<artifactId>ucum</artifactId>
<version>1.0.3</version>
<exclusions>
<exclusion>
<groupId>xpp3</groupId>
<artifactId>xpp3</artifactId>
</exclusion>
<exclusion>
<groupId>xpp3</groupId>
<artifactId>xpp3_xpath</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- HAPI Fhir dependencies -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-client</artifactId>
<version>${hapi.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${hapi.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${hapi.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${hapi.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${hapi.version}</version>
<exclusions>
<exclusion>
<groupId>xpp3</groupId>
<artifactId>xpp3</artifactId>
</exclusion>
<exclusion>
<groupId>xpp3</groupId>
<artifactId>xpp3_xpath</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r5</artifactId>
<version>${hapi.version}</version>
<exclusions>
<exclusion>
<groupId>xpp3</groupId>
<artifactId>xpp3</artifactId>
</exclusion>
<exclusion>
<groupId>xpp3</groupId>
<artifactId>xpp3_xpath</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- These break the engine in certain environments due to the
fact that they include the javax.xml.namespace package, which creates
a split package. We may need to filter or exclude them at some point
in the future.-->
<dependency>
<groupId>xpp3</groupId>
<artifactId>xpp3</artifactId>
<version>1.1.4c</version>
</dependency>
<dependency>
<groupId>xpp3</groupId>
<artifactId>xpp3_xpath</artifactId>
<version>1.1.4c</version>
</dependency>
<!-- Testing dependencies -->
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>cql-to-elm</artifactId>
<version>${cqframework.version}</version>
<!-- The scope of this dependency must remain as test.
There is an intentional separation between the CQL translator and the CQL engine -->
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
<version>7.5</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-all</artifactId>
<version>1.3</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>uk.co.datumedge</groupId>
<artifactId>hamcrest-json</artifactId>
<version>0.2</version>
<exclusions>
<exclusion>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-core</artifactId>
</exclusion>
</exclusions>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>${slf4j.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.github.tomakehurst</groupId>
<artifactId>wiremock-jre8</artifactId>
<version>2.32.0</version>
<scope>test</scope>
</dependency>
</dependencies>
</dependencyManagement>
<!-- Used by every project -->
<dependencies>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>cql-to-elm</artifactId>
</dependency>
<dependency>
<groupId>org.testng</groupId>
<artifactId>testng</artifactId>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>hamcrest-all</artifactId>
</dependency>
<dependency>
<groupId>uk.co.datumedge</groupId>
<artifactId>hamcrest-json</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
</dependency>
</dependencies>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
<version>3.1.2</version>
<dependencies>
<dependency>
<groupId>com.puppycrawl.tools</groupId>
<artifactId>checkstyle</artifactId>
<version>9.2.1</version>
</dependency>
</dependencies>
<executions>
<execution>
<?m2e ignore?>
<id>validate</id>
<phase>generate-sources</phase>
<configuration>
<configLocation>config/checkstyle/checkstyle.xml</configLocation>
<encoding>UTF-8</encoding>
<consoleOutput>true</consoleOutput>
<failOnViolation>true</failOnViolation>
<failsOnError>false</failsOnError>
<!-- don't include the generated-sources -->
<sourceDirectories>
<sourceDirectory>${project.build.sourceDirectory}</sourceDirectory>
<sourceDirectory>${project.build.testSourceDirectory}</sourceDirectory>
</sourceDirectories>
</configuration>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs-maven-plugin</artifactId>
<version>4.5.0.0</version>
<dependencies>
<!-- overwrite dependency on spotbugs if you want to specify the version of spotbugs -->
<dependency>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs</artifactId>
<version>4.5.2</version>
</dependency>
</dependencies>
<configuration>
<effort>Max</effort>
<!-- TODO: Gradually migrate this down to Medium and then Low-->
<threshold>High</threshold>
<excludeFilterFile>config/spotbugs/exclude.xml</excludeFilterFile>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>3.0.0-M1</version>
</plugin>
<plugin>
<groupId>org.jvnet.jaxb2.maven2</groupId>
<artifactId>maven-jaxb2-plugin</artifactId>
<!-- Update to 0.14.1 once released to remove illegal reflective access warnings-->
<version>0.14.0</version>
<!-- This replaces the bad version of the jaxb-runtime with the non-reflective access one. -->
<dependencies>
<dependency>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-runtime</artifactId>
<version>2.4.0-b180830.0438</version>
</dependency>
<dependency>
<groupId>org.jvnet.jaxb2.maven2</groupId>
<artifactId>maven-jaxb23-plugin</artifactId>
<version>0.14.0</version>
<exclusions>
<exclusion>
<groupId>org.glassfish.jaxb</groupId>
<artifactId>jaxb-runtime</artifactId>
</exclusion>
</exclusions>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.8.1</version>
<configuration>
<source>1.8</source>
<target>1.8</target>
<failOnError>true</failOnError>
<failOnWarning>false</failOnWarning>
<compilerArgs>
<arg>-Xlint:all</arg>
<!-- This fixes a boostrapclass path warning which the "release" property fixes on Java 9+ -->
<arg>-Xlint:-options</arg>
<arg>-Werror</arg>
</compilerArgs>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.1.2</version>
<configuration>
<archive>
<manifest>
<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.3.1</version>
<configuration>
<source>8</source>
</configuration>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.1.0</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
<version>1.6</version>
<executions>
<execution>
<id>sign-artifacts</id>
<phase>verify</phase>
<goals>
<goal>sign</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.7</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://oss.sonatype.org/</nexusUrl>
<!-- <autoReleaseAfterClose>true</autoReleaseAfterClose> -->
<skipStagingRepositoryClose>true</skipStagingRepositoryClose>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
<version>3.0.0-M2</version>
<executions>
<execution>
<id>enforce-no-snapshots</id>
<goals>
<goal>enforce</goal>
</goals>
<configuration>
<rules>
<requireReleaseVersion>
<message>No Snapshot Versions Allowed!</message>
</requireReleaseVersion>
<requireReleaseDeps>
<message>No Snapshot Dependencies Allowed!</message>
</requireReleaseDeps>
</rules>
<fail>true</fail>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>2.19.1</version>
<configuration>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
</configuration>
<executions>
<execution>
<goals>
<goal>integration-test</goal>
<goal>verify</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>2.21.0</version>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<version>3.0.0</version>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>0.8.6</version>
<executions>
<execution>
<id>jacoco-initialize</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>jacoco-report</id>
<phase>prepare-package</phase>
<goals>
<goal>report</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-pmd-plugin</artifactId>
<version>3.15.0</version>
<dependencies>
<dependency>
<groupId>org.ow2.asm</groupId>
<artifactId>asm</artifactId>
<version>9.2</version>
</dependency>
</dependencies>
<configuration>
<analysisCache>true</analysisCache>
<printFailingErrors>true</printFailingErrors>
<!-- TODO: Gradually raise to 5 -->
<failurePriority>2</failurePriority>
</configuration>
<executions>
<execution>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
<version>3.1.1</version>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<!--plugin>
<groupId>com.github.spotbugs</groupId>
<artifactId>spotbugs-maven-plugin</artifactId>
<executions>
<execution>
<goals>
<goal>check</goal>
</goals>
</execution>
</executions>
</plugin-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-pmd-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-checkstyle-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.jvnet.jaxb2.maven2</groupId>
<artifactId>maven-jaxb2-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
</plugin>
</plugins>
</build>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
</plugin>
</plugins>
</reporting>
<profiles>
<profile>
<id>release</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-enforcer-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-gpg-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>java-9</id>
<activation>
<jdk>[9,)</jdk>
</activation>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<release>8</release>
</configuration>
</plugin>
</plugins>
</pluginManagement>
</build>
</profile>
</profiles>
</project>