Merge pull request #82 from ePSIC-DLS/TomSlater-patch-2

Fix bug in manual segmentation
ePSIC-DLS · May 15, 2024 · 1c54bee · 1c54bee
2 parents 33b1c24 + 5ae8bc0
commit 1c54bee
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/particlespy/particle_analysis.py b/particlespy/particle_analysis.py
@@ -55,7 +55,7 @@ def particle_analysis(acquisition,parameters,particles=None,mask=np.zeros((1))):
         image = acquisition
 
     if str(mask) == 'UI':
-        labeled = label(np.load(os.path.dirname(inspect.getfile(process))+'/parameters/manual_mask.npy')[:,:,0])
+        labeled = label(np.load(os.path.dirname(inspect.getfile(process))+'/parameters/manual_mask.npy')[:,:,0]>0)
         print(len(labeled))
         #plt.imshow(labeled)
         #morphology.remove_small_objects(labeled,30,in_place=True)