diff --git a/mimic-iv/README.md b/mimic-iv/README.md index d8e54499f..7f62ceddc 100644 --- a/mimic-iv/README.md +++ b/mimic-iv/README.md @@ -1,2 +1,14 @@ -# mimic-iv-code -Code and discussion around the MIMIC-IV database \ No newline at end of file +# MIMIC-IV + +## Brief introduction + +The repository consists of a number of Structured Query Language (SQL) scripts which build the MIMIC-IV database in a number of systems and extract useful concepts from the raw data. Subfolders include: + +* [buildmimic](/mimic-iv/buildmimic) - Scripts to build MIMIC-IV in various relational database management system (RDMS), in particular [postgres](/buildmimic/postgres) is a popular open source option +* [concepts](/mimic-iv/concepts) - Useful views/summaries of the data in MIMIC-IV, e.g. demographics, organ failure scores, severity of illness scores, durations of treatment, easier to analyze views, etc. The paper above describes these in detail, and a README in the subfolder lists concepts generated. + +### Concepts + +The [MIMIC-IV concepts](/mimic-iv/concepts) are written in an SQL syntax compatible with BigQuery. These scripts have been converted to PostgreSQL by a script. To generate the concepts in PostgreSQL, see the [MIMIC-IV postgresql concepts subfolder](/mimic-iv/concepts/postgres). + +Tables in the BigQuery `physionet-data.mimic_derived` dataset are generated using the concepts made available in this folder. These tables are generated using the code in the [latest release on GitHub](https://github.com/MIT-LCP/mimic-code/releases).