Run LKscripts/analyze_main_SCEBL_fMRI_only36FinalSubjects.m -Change projectDir output : save in /results/behavioral/SCEBLmri_data_FINAL_N36.mat
run analyze_simrate.m (~/LKscripts) outputs/~results/behavioral/simmat.mat simrate.mat # modified simrate, to export simmat3 (order of cond diff)
run SCEBmri_gen_SCEBL_fMRI.m (in ~scripts/LKscripts) output ~/results/behavioral/SCEBLmri_data_gen36.mat (SCEBLmri_gendata variable)
Download/add 'smDistance-wingfield2022.xlsx' to 'results/behavioral/' -comes from Landcaster U, sensorimotor calculator, sim matrix of learn cues
Run simModels_LearnGenData_asCSV.m -Specify similarity models, compute trial simratings -saves up-to-date Trial x Trial in a .csv at /results/SCEBLmri_Finaldata_TxT_N36.csv - also process trial by trial sim ratings, as well as - median sim matrices for different models (e.g. Landcaster, theoretical, empirical...) - Save SCEBLmri_gendata.mat (with added var) to ~/results
run LKscriptOutput_mainEffects.m -wil run multilevel GLM for learning and generalization task - plot used for NeurAI congress (mean diff. of pain ~ CS) as well
run fMRI_QC.m - Will perform 1)func imgs extraction, 2)vifs extractions 3)remove trials above thresh - Change thresh at begining of script accordingly - Will save a subject struct having subj names, vifs per trials <save ('subjectsVifs.mat', "subjects")> - vifStruct.outvifs contains vector of trials exceeding vif_thresh (1 if >, 0 if <)
run run_med.m - performs data extraction, reorganize files in cell/subs, mean centering vars.. - removes trials for all variables for which the vifStruct.outvifs has 1 in the vector - performs multilevel mediation with boot strap... - change saveDir, and it will save a folder/model in saveDir
run cv_pred.m