Paired end data

[PaolaBenaglio]

Hi Thank you for the tool!
I am looking for a way to extract soft-clipped reads from human WGS mapping with paired end reads. Your tool here extractSoftclipped does something very close to what I need, with the difference that I need also the paired read (even if one is not soft-clipped), and the name of the read too.
My goal is to run an insertion site analysis but the tool I am using is very slow for WGS and I want to input only pre-filter soft-clipped reads.
Thank you very much for any help you can give!
Paola