From fe4d302037602d670b72615356691ad29ae0f713 Mon Sep 17 00:00:00 2001 From: dportik <daniel.portik@gmail.com> Date: Mon, 18 Jan 2021 07:20:28 -0800 Subject: [PATCH] Update README.md --- Find-Best-Projections/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Find-Best-Projections/README.md b/Find-Best-Projections/README.md index b0e1ddd..56b94f4 100644 --- a/Find-Best-Projections/README.md +++ b/Find-Best-Projections/README.md @@ -15,7 +15,7 @@ example files. ## Overview: -This is meant to be a general use script to run `dadi` to fit any model on an afs/jsfs with one to three populations, then create figures comparing the data and model sfs. To use this workflow, you'll need a SNPs input text file to create an allele frequency or joint site frequency spectrum object. Alternatively, you can import a frequency spectrum of your own creation, editing the script appropriately (see dadi manual). The user will have to edit information about their allele frequency spectrum, and a #************** marks lines in the script that will have to be edited. +This is meant to be a general use script to generate combinations of projection sizes to determine the resulting numbers of segregating sites. To use this workflow, you'll need a SNPs input text file to create an allele frequency or joint site frequency spectrum object. Alternatively, you can import a frequency spectrum of your own creation, editing the script appropriately (see dadi manual). The user will have to edit information about their allele frequency spectrum, and a #************** marks lines in the script that will have to be edited. The user provides an input SNPs file along with the relevant information (population IDs, folded vs. unfolded). Finally, a maximum projection size is set and a minimum fraction required for the projection sizes. The script will then generate all permutations of projection size combinations and write the results to stdout.