tox.ini

[tox]
envlist = py{38,39,310}-deps_{min,max}
skip_missing_interpreters = True
requires =  setuptools

[testenv]
allowlist_externals = pytest
download = True

deps =
    pytest
    click
    nbmake
    typing_extensions==4.3.0
    ipywidgets==7.7.0
    py38-deps_min: scikit-fda==0.5
    py{39,310}-deps_min: scikit-fda==0.7
    deps_min: matplotlib==3.5.1
    

conda_deps = 
    deps_min: scanpy==1.7.2
    deps_min: scikit-learn-intelex
    deps_min: imbalanced-learn==0.10.1
    deps_min: scipy==1.8.0
    deps_min: anndata==0.8.0
    deps_min: treelib==1.6.1
    deps_min: pydot==1.4.2
    deps_min: pandas<2.0.0
    deps_min: tqdm==4.64.0
    deps_min: seaborn==0.12.2
    deps_min: ipython==8.4.0
    deps_min: ipywidgets==7.7.0
    py38-deps_min: scikit-learn==1.1.2
    py38-deps_min: numpy==1.21.0
    py38-deps_min: pandas==1.1.1
    py{39,310}-deps_min: pandas
    py{39,310}-deps_min: numpy<1.23.0
    py{39,310}-deps_min: scikit-learn
    py{39,310}-deps_min: leidenalg
    py38-deps_min: leidenalg==0.8.9
    
conda_spec = 
    deps_max: requirements.txt

conda_channels =
    conda-forge

commands =  python -m pytest
            python -m pytest --nbmake docs/Integrated_Classification.ipynb docs/Landmark_Registration.ipynb docs/Hierarchy_Design.ipynb docs/High_Confidence_Thresholding.ipynb docs/Exploring_Feature_Importances.ipynb docs/Pretrained_Classification.ipynb docs/Hyperparameter_Optimization.ipynb