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About performance gap between reproduced Pronet results and the reported performance in the paper "LEARNING HIERARCHICAL PROTEIN REPRESENTATIONS VIA COMPLETE 3D GRAPH NETWORKS". #252

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aagdggdgggdd opened this issue Oct 15, 2024 · 0 comments

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aagdggdgggdd commented Oct 15, 2024

Thank you for providing the Pronet code. I have reproduced Pronet experiments multiple times under identical conditions, including using the same graph cards. However, there is a noticeable performance gap (approximately 1.5-5%) on both ProFunct and HomologyTAPE datasets between my reproduced results and those reported. Could you kindly share the optimal hyperparameter settings, rather than the default ones?

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