Change Log

Notable changes to scNapBar will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased]

[1.1.0] 15.10.2021

Changed

Update NanoSim to latest version (environment.yaml), simplify install.
Modify sort in align_longreads, and pipe output to BAM directly.
Minor changes: move hard coded fields to config file, adjust cluster.json, etc.
Updated documentation.
Upgraded minimap2 to 2.21-r1071.

Added

File ./gitignore to ignore build/temporary files.
Seed to sim_reads (NanoSim simulator.py), and shuf in build_genome.
I/O option to minimap2 call in align_longreads.

Fixed

Delete temporary files.
Use threads. TODO: see Control the number of cores/threads per rule.
Temporary fix in sim_reads due to Breaking changes in format output from 3.0.0-beta. TODO: modify pipeline.

Removed

Rule unzip_fq.

[1.0.0] Undocumented