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shokrof

benchmark code

May 5, 2024

1a0eb61 · May 5, 2024

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Name		Name	Last commit message	Last commit date
parent directory ..
__pycache__		__pycache__	metagraph workflow	Apr 24, 2024
data		data	metagraph workflow	Apr 24, 2024
#assign-variant-ids.py#		#assign-variant-ids.py#	metagraph workflow	Apr 24, 2024
#convert-to-biallelic.py#		#convert-to-biallelic.py#	metagraph workflow	Apr 24, 2024
add_bed_overlaps.py		add_bed_overlaps.py	metagraph workflow	Apr 24, 2024
analysis.py		analysis.py	metagraph workflow	Apr 24, 2024
annotate.py		annotate.py	metagraph workflow	Apr 24, 2024
assign-variant-ids.py		assign-variant-ids.py	metagraph workflow	Apr 24, 2024
assign-variant-ids2.py		assign-variant-ids2.py	metagraph workflow	Apr 24, 2024
assign-variant-ids3.py		assign-variant-ids3.py	metagraph workflow	Apr 24, 2024
assign-variant-ids3.py~		assign-variant-ids3.py~	metagraph workflow	Apr 24, 2024
collect-vcf-stats.py		collect-vcf-stats.py	metagraph workflow	Apr 24, 2024
compare-predictions.py		compare-predictions.py	metagraph workflow	Apr 24, 2024
compress-vcf.sh		compress-vcf.sh	metagraph workflow	Apr 24, 2024
compute-coverage.sh		compute-coverage.sh	metagraph workflow	Apr 24, 2024
compute-genome-length.py		compute-genome-length.py	metagraph workflow	Apr 24, 2024
compute-runtime.py		compute-runtime.py	metagraph workflow	Apr 24, 2024
convert-to-biallelic.py		convert-to-biallelic.py	metagraph workflow	Apr 24, 2024
downsample-fasta.sh		downsample-fasta.sh	metagraph workflow	Apr 24, 2024
extract-varianttype.bk.py		extract-varianttype.bk.py	metagraph workflow	Apr 24, 2024
extract-varianttype.py		extract-varianttype.py	metagraph workflow	Apr 24, 2024
filter-sex-chromosomes.py		filter-sex-chromosomes.py	metagraph workflow	Apr 24, 2024
fix-vcf.py		fix-vcf.py	metagraph workflow	Apr 24, 2024
gatk-helper.py		gatk-helper.py	metagraph workflow	Apr 24, 2024
genomesimulator.py		genomesimulator.py	metagraph workflow	Apr 24, 2024
genotype-evaluation.py		genotype-evaluation.py	metagraph workflow	Apr 24, 2024
get_ids.py		get_ids.py	metagraph workflow	Apr 24, 2024
graphtyper-postprocess.py		graphtyper-postprocess.py	metagraph workflow	Apr 24, 2024
hom_to_phased.py		hom_to_phased.py	metagraph workflow	Apr 24, 2024
hwe.py		hwe.py	metagraph workflow	Apr 24, 2024
intersect-callsets.py		intersect-callsets.py	metagraph workflow	Apr 24, 2024
intersect-helper.sh		intersect-helper.sh	metagraph workflow	Apr 24, 2024
mark-duplicates.sh		mark-duplicates.sh	metagraph workflow	Apr 24, 2024
mendelian-consistency.py		mendelian-consistency.py	metagraph workflow	Apr 24, 2024
merge-tables.py		merge-tables.py	metagraph workflow	Apr 24, 2024
merge_vcfs.py		merge_vcfs.py	metagraph workflow	Apr 24, 2024
non-repetitive-regions.sh		non-repetitive-regions.sh	metagraph workflow	Apr 24, 2024
paragraph-helper.py		paragraph-helper.py	metagraph workflow	Apr 24, 2024
paragraph-preprocess.sh		paragraph-preprocess.sh	metagraph workflow	Apr 24, 2024
plot-af.py		plot-af.py	metagraph workflow	Apr 24, 2024
plot-callset-statistics.py		plot-callset-statistics.py	metagraph workflow	Apr 24, 2024
plot-concordances.py		plot-concordances.py	metagraph workflow	Apr 24, 2024
plot-concordances_index.py		plot-concordances_index.py	metagraph workflow	Apr 24, 2024
plot-concordances_index.py~		plot-concordances_index.py~	metagraph workflow	Apr 24, 2024
plot-concordances_noBayesTyper.py		plot-concordances_noBayesTyper.py	metagraph workflow	Apr 24, 2024
plot-concordances_noBayesTyper.py~		plot-concordances_noBayesTyper.py~	metagraph workflow	Apr 24, 2024
plot-distances.py		plot-distances.py	metagraph workflow	Apr 24, 2024
plot-fscores copy.py		plot-fscores copy.py	metagraph workflow	Apr 24, 2024
plot-fscores.bk.py		plot-fscores.bk.py	metagraph workflow	Apr 24, 2024
plot-fscores.py		plot-fscores.py	metagraph workflow	Apr 24, 2024
plot-fscores_index.py		plot-fscores_index.py	metagraph workflow	Apr 24, 2024
plot-fscores_index.py~		plot-fscores_index.py~	metagraph workflow	Apr 24, 2024
plot-fscores_new.py		plot-fscores_new.py	metagraph workflow	Apr 24, 2024
plot-fscores_new.py~		plot-fscores_new.py~	metagraph workflow	Apr 24, 2024
plot-fscores_noBayesTyper.py		plot-fscores_noBayesTyper.py	metagraph workflow	Apr 24, 2024
plot-precision-recall copy.py		plot-precision-recall copy.py	metagraph workflow	Apr 24, 2024
plot-precision-recall.py		plot-precision-recall.py	metagraph workflow	Apr 24, 2024
plot-precision-recall_index.py		plot-precision-recall_index.py	metagraph workflow	Apr 24, 2024
plot-precision-recall_index.py~		plot-precision-recall_index.py~	metagraph workflow	Apr 24, 2024
plot-precision-recall_noBayesTyper.py		plot-precision-recall_noBayesTyper.py	metagraph workflow	Apr 24, 2024
plot-precision-recall_noBayesTyper.py~		plot-precision-recall_noBayesTyper.py~	metagraph workflow	Apr 24, 2024
plot-regions.py		plot-regions.py	metagraph workflow	Apr 24, 2024
plot_accuracy_new.py		plot_accuracy_new.py	metagraph workflow	Apr 24, 2024
plot_accuracy_new_index.py		plot_accuracy_new_index.py	metagraph workflow	Apr 24, 2024
precision-recall.py		precision-recall.py	metagraph workflow	Apr 24, 2024
prepare-beds.sh		prepare-beds.sh	metagraph workflow	Apr 24, 2024
remove-low-qual.py		remove-low-qual.py	metagraph workflow	Apr 24, 2024
remove_clusters.py		remove_clusters.py	metagraph workflow	Apr 24, 2024
run-platypus-discover.sh		run-platypus-discover.sh	metagraph workflow	Apr 24, 2024
run-platypus.sh		run-platypus.sh	metagraph workflow	Apr 24, 2024
sample-panels.py		sample-panels.py	metagraph workflow	Apr 24, 2024
select_ids.py		select_ids.py	metagraph workflow	Apr 24, 2024
set-to-missing.py		set-to-missing.py	metagraph workflow	Apr 24, 2024
skip-untypable.py		skip-untypable.py	metagraph workflow	Apr 24, 2024
split-vcf.py		split-vcf.py	metagraph workflow	Apr 24, 2024
test_merge-vcfs.py		test_merge-vcfs.py	metagraph workflow	Apr 24, 2024
test_variantclassifier.py		test_variantclassifier.py	metagraph workflow	Apr 24, 2024
unphase.py		unphase.py	benchmark code	May 5, 2024
untypable-bubbles.py		untypable-bubbles.py	metagraph workflow	Apr 24, 2024
untypable-ids.py		untypable-ids.py	metagraph workflow	Apr 24, 2024
variant-counter.py		variant-counter.py	metagraph workflow	Apr 24, 2024
variant-length-comparison.py		variant-length-comparison.py	metagraph workflow	Apr 24, 2024
variant-statistics.py		variant-statistics.py	metagraph workflow	Apr 24, 2024
variantclassifier.py		variantclassifier.py	metagraph workflow	Apr 24, 2024
variantclassifier.pyc		variantclassifier.pyc	metagraph workflow	Apr 24, 2024
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