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edited conf, dorado docker image

nidhidavpushed 1 commit to dev • dc5c62b…724e835 • 
on Dec 16, 2024

added option to input phased vcf for whatshap

nidhidavpushed 1 commit to dev • 0813fcd…dc5c62b • 
on Oct 2, 2024

updated channels, made whatshap + sorted bams publish optional

nidhidavpushed 1 commit to dev • 2ff1352…0813fcd • 
on Aug 30, 2024

updated dorado image

nidhidavpushed 1 commit to dev • 7eb79d0…2ff1352 • 
on Aug 12, 2024

redid publishdir

nidhidavpushed 1 commit to dev • cdef156…7eb79d0 • 
on Aug 8, 2024

fixed modkit symlinks, added samtools stats

nidhidavpushed 1 commit to dev • ec6cf24…cdef156 • 
on Aug 8, 2024

Update MODKIT.nf

dhspencepushed 1 commit to dev • 27d68ee…ec6cf24 • 
on Jul 11, 2024

fixed determineLabel bug

nidhidavpushed 1 commit to dev • bb6a076…27d68ee • 
on Jun 25, 2024

updated modkit docker image, modkit process, publishdir, added modkit…

nidhidavpushed 1 commit to dev • b920923…bb6a076 • 
on Jun 25, 2024

merged with whatshap

nidhidavpushed 4 commits to dev • 015f112…b920923 • 
on Jun 11, 2024

Update MODKIT.nf again with names

dhspencepushed 1 commit to dev • 6cbd249…015f112 • 
on Jun 11, 2024

Update MODKIT.nf to change output names

dhspencepushed 1 commit to dev • 7a8b135…6cbd249 • 
on Jun 11, 2024

updated permissions for bin

nidhidavpushed 1 commit to whatshap • 521f1eb…8fe4655 • 
on Mar 6, 2024

tested and updated whatshap

nidhidavpushed 1 commit to whatshap • 3cffd9d…521f1eb • 
on Mar 5, 2024

added whatshap for phasing

dhspencepushed 1 commit to whatshap • 7a8b135…3cffd9d • 
on Mar 4, 2024

update basecall model to v4.3.0

dhspencecreated whatshap • 7a8b135 • 
on Mar 1, 2024

update basecall model to v4.3.0

m-mahgoubpushed 1 commit to dev • 66c738c…7a8b135 • 
on Feb 8, 2024

remove dorado_reads_chunksize option

m-mahgoubpushed 1 commit to dev • aceed69…66c738c • 
on Feb 5, 2024

increase process_high max memory

m-mahgoubpushed 1 commit to dev • da203cb…aceed69 • 
on Jan 25, 2024

update pepper docker image

m-mahgoubpushed 1 commit to dev • 368d12f…da203cb • 
on Jan 25, 2024

modify dorado batch default

m-mahgoubpushed 1 commit to dev • a0879b2…368d12f • 
on Jan 25, 2024

modify dorado batch default

m-mahgoubpushed 1 commit to dev • a4a549b…a0879b2 • 
on Jan 25, 2024

modify configs

m-mahgoubpushed 1 commit to dev • 68ce539…a4a549b • 
on Jan 25, 2024

modify dorado docker image to v2

m-mahgoubpushed 1 commit to dev • 790ba22…68ce539 • 
on Jan 25, 2024

modify configs

m-mahgoubpushed 1 commit to dev • c372d6e…790ba22 • 
on Jan 25, 2024

modify cpu resources in basecalling

m-mahgoubpushed 1 commit to dev • 4c8c5f4…c372d6e • 
on Jan 24, 2024

make use_gpu not required

m-mahgoubpushed 1 commit to dev • 267d01b…4c8c5f4 • 
on Jan 24, 2024

fix the model path in test config

m-mahgoubpushed 1 commit to dev • 050ffde…267d01b • 
on Jan 24, 2024

modify test profile

m-mahgoubpushed 1 commit to dev • ac4254e…050ffde • 
on Jan 23, 2024

fix permission denied in bin

m-mahgoubpushed 1 commit to dev • 194f46a…ac4254e • 
on Jan 23, 2024