From a636cc0912105e2b8d8c6f2a99ea0b9444fdd412 Mon Sep 17 00:00:00 2001 From: Daniel Himmelstein Date: Sat, 26 Mar 2016 15:14:30 -0700 Subject: [PATCH] Add README --- README.md | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..d2f31c0 --- /dev/null +++ b/README.md @@ -0,0 +1,9 @@ +# Extracting disease–gene associations from DisGeNET + +[DisGeNET](http://www.disgenet.org/) is a resource that integrates disease–gene associations from several sources [[ref](http://doi.org/10.1093/database/bav028 "Pinero et al (2015) DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes")]. We're [using the resource](http://doi.org/10.15363/thinklab.d105 "Thinklab discussion: Processing DisGeNET for disease-gene relationships") in Rephetio, our network for drug repurposing. This repository extracts associations for the diseases and genes in rephetio. + +[`disgenet.ipynb`](disgenet.ipynb) processes the DisGeNET downloads and outputs user-friendly TSVs to [`data`](data). + +## License + +DisGeNET content and derivatives are licensed under the [ODbL 1.0](http://opendatacommons.org/licenses/odbl/summary/ "Open Database License (ODbL) v1.0"). All original content is licensed under [CC0 1.0](https://creativecommons.org/publicdomain/zero/1.0/ "CC0 1.0 Universal: Public Domain Dedication").