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macos Version 10.11.6 #25

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Elena2506 opened this issue Nov 9, 2018 · 9 comments
Closed

macos Version 10.11.6 #25

Elena2506 opened this issue Nov 9, 2018 · 9 comments

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@Elena2506
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Elena2506 commented Nov 9, 2018 •
edited by navjotk
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Hi, I cannot make pyrevolve works in macos version 10.11.6 Thanks!

(devito) Elenas-iMac:pyrevolve-1.0.1 elena$ python setup.py install
running install
running bdist_egg
running egg_info
writing pyrevolve.egg-info/PKG-INFO
writing dependency_links to pyrevolve.egg-info/dependency_links.txt
writing top-level names to pyrevolve.egg-info/top_level.txt
reading manifest file 'pyrevolve.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'pyrevolve.egg-info/SOURCES.txt'
installing library code to build/bdist.macosx-10.7-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/pyrevolve
copying pyrevolve/__init__.py -> build/lib.macosx-10.7-x86_64-3.6/pyrevolve
copying pyrevolve/_version.py -> build/lib.macosx-10.7-x86_64-3.6/pyrevolve
copying pyrevolve/pyrevolve.py -> build/lib.macosx-10.7-x86_64-3.6/pyrevolve
UPDATING build/lib.macosx-10.7-x86_64-3.6/pyrevolve/_version.py
set build/lib.macosx-10.7-x86_64-3.6/pyrevolve/_version.py to '1.0.1'
running build_ext
building 'pyrevolve.crevolve' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/pyrevolve
creating build/temp.macosx-10.7-x86_64-3.6/src
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/elena/anaconda2/envs/devito/include -arch x86_64 -I/Users/elena/anaconda2/envs/devito/include -arch x86_64 -I./pyrevolve -I. -Ipyrevolve -I/Users/elena/anaconda2/envs/devito/include/python3.6m -c pyrevolve/crevolve.cpp -o build/temp.macosx-10.7-x86_64-3.6/pyrevolve/crevolve.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from pyrevolve/../include/revolve_c.h:6:0,
                 from pyrevolve/crevolve.cpp:645:
pyrevolve/../include/revolve.h: In destructor ‘Revolve::~Revolve()’:
pyrevolve/../include/revolve.h:441:22: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
  ~Revolve() { delete f, delete checkpoint; }
                      ^
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/elena/anaconda2/envs/devito/include -arch x86_64 -I/Users/elena/anaconda2/envs/devito/include -arch x86_64 -I./pyrevolve -I. -Ipyrevolve -I/Users/elena/anaconda2/envs/devito/include/python3.6m -c src/revolve_c.cpp -o build/temp.macosx-10.7-x86_64-3.6/src/revolve_c.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from src/../include/revolve_c.h:6:0,
                 from src/revolve_c.cpp:1:
src/../include/revolve.h: In destructor ‘Revolve::~Revolve()’:
src/../include/revolve.h:441:22: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
  ~Revolve() { delete f, delete checkpoint; }
                      ^
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:3:11: warning: section "__textcoal_nt" is deprecated
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:3:11: note: change section name to "__text"
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:972:11: warning: section "__const_coal" is deprecated
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:972:11: note: change section name to "__const"
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:979:11: warning: section "__const_coal" is deprecated
        .section __TEXT,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:979:11: note: change section name to "__const"
        .section __TEXT,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:984:11: warning: section "__const_coal" is deprecated
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccA7X8km.s:984:11: note: change section name to "__const"
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/elena/anaconda2/envs/devito/include -arch x86_64 -I/Users/elena/anaconda2/envs/devito/include -arch x86_64 -I./pyrevolve -I. -Ipyrevolve -I/Users/elena/anaconda2/envs/devito/include/python3.6m -c src/revolve.cpp -o build/temp.macosx-10.7-x86_64-3.6/src/revolve.o
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from src/revolve.cpp:23:0:
src/../include/revolve.h: In destructor ‘Revolve::~Revolve()’:
src/../include/revolve.h:441:22: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
  ~Revolve() { delete f, delete checkpoint; }
                      ^
src/revolve.cpp: In member function ‘ACTION::action Revolve::revolve(int*, int*, int*, int, int*)’:
src/revolve.cpp:1247:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
     delete f;
            ^
src/revolve.cpp:1254:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
     delete f;
            ^
src/revolve.cpp: In member function ‘ACTION::action Revolve::revolve()’:
src/revolve.cpp:1273:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
     delete f;
            ^
src/revolve.cpp:1280:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
     delete f;
            ^
src/revolve.cpp: In member function ‘void Revolve::turn(int)’:
src/revolve.cpp:1304:12: warning: deleting object of polymorphic class type ‘Schedule’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
     delete f;
            ^
src/revolve.cpp:1306:12: warning: deleting object of polymorphic class type ‘Online’ which has non-virtual destructor might cause undefined behaviour [-Wdelete-non-virtual-dtor]
     delete g;
            ^
src/revolve.cpp: In member function ‘int Revolve::get_r(int, int)’:
src/revolve.cpp:1400:20: warning: unused variable ‘num’ [-Wunused-variable]
   int reps, range, num;
                    ^
src/revolve.cpp: In member function ‘int Revolve::get_r()’:
src/revolve.cpp:1431:20: warning: unused variable ‘num’ [-Wunused-variable]
   int reps, range, num;
                    ^
src/revolve.cpp: In member function ‘virtual ACTION::action Moin::revolve()’:
src/revolve.cpp:824:20: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       check = index;
                    ^
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:3:11: warning: section "__textcoal_nt" is deprecated
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:3:11: note: change section name to "__text"
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:19573:11: warning: section "__textcoal_nt" is deprecated
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:19573:11: note: change section name to "__text"
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:33133:11: warning: section "__textcoal_nt" is deprecated
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:33133:11: note: change section name to "__text"
        .section __TEXT,__textcoal_nt,coalesced,pure_instructions
                 ^      ~~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38355:11: warning: section "__const_coal" is deprecated
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38355:11: note: change section name to "__const"
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38362:11: warning: section "__const_coal" is deprecated
        .section __TEXT,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38362:11: note: change section name to "__const"
        .section __TEXT,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38367:11: warning: section "__const_coal" is deprecated
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38367:11: note: change section name to "__const"
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38375:11: warning: section "__const_coal" is deprecated
        .section __TEXT,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38375:11: note: change section name to "__const"
        .section __TEXT,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38435:11: warning: section "__const_coal" is deprecated
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
/var/folders/wb/bt4160ms6sl4zpcl2dqg406m0000gn/T//ccpBjWbX.s:38435:11: note: change section name to "__const"
        .section __DATA,__const_coal,coalesced
                 ^      ~~~~~~~~~~~~
g++ -bundle -undefined dynamic_lookup -L/Users/elena/anaconda2/envs/devito/lib -arch x86_64 -L/Users/elena/anaconda2/envs/devito/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.7-x86_64-3.6/pyrevolve/crevolve.o build/temp.macosx-10.7-x86_64-3.6/src/revolve_c.o build/temp.macosx-10.7-x86_64-3.6/src/revolve.o -o build/lib.macosx-10.7-x86_64-3.6/pyrevolve/crevolve.cpython-36m-darwin.so
creating build/bdist.macosx-10.7-x86_64
creating build/bdist.macosx-10.7-x86_64/egg
creating build/bdist.macosx-10.7-x86_64/egg/pyrevolve
copying build/lib.macosx-10.7-x86_64-3.6/pyrevolve/__init__.py -> build/bdist.macosx-10.7-x86_64/egg/pyrevolve
copying build/lib.macosx-10.7-x86_64-3.6/pyrevolve/_version.py -> build/bdist.macosx-10.7-x86_64/egg/pyrevolve
copying build/lib.macosx-10.7-x86_64-3.6/pyrevolve/crevolve.cpython-36m-darwin.so -> build/bdist.macosx-10.7-x86_64/egg/pyrevolve
copying build/lib.macosx-10.7-x86_64-3.6/pyrevolve/pyrevolve.py -> build/bdist.macosx-10.7-x86_64/egg/pyrevolve
byte-compiling build/bdist.macosx-10.7-x86_64/egg/pyrevolve/__init__.py to __init__.cpython-36.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/pyrevolve/_version.py to _version.cpython-36.pyc
byte-compiling build/bdist.macosx-10.7-x86_64/egg/pyrevolve/pyrevolve.py to pyrevolve.cpython-36.pyc
creating stub loader for pyrevolve/crevolve.cpython-36m-darwin.so
byte-compiling build/bdist.macosx-10.7-x86_64/egg/pyrevolve/crevolve.py to crevolve.cpython-36.pyc
creating build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying pyrevolve.egg-info/PKG-INFO -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying pyrevolve.egg-info/SOURCES.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying pyrevolve.egg-info/dependency_links.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
copying pyrevolve.egg-info/top_level.txt -> build/bdist.macosx-10.7-x86_64/egg/EGG-INFO
writing build/bdist.macosx-10.7-x86_64/egg/EGG-INFO/native_libs.txt
zip_safe flag not set; analyzing archive contents...
pyrevolve.__pycache__.crevolve.cpython-36: module references __file__
creating dist
creating 'dist/pyrevolve-1.0.1-py3.6-macosx-10.7-x86_64.egg' and adding 'build/bdist.macosx-10.7-x86_64/egg' to it
removing 'build/bdist.macosx-10.7-x86_64/egg' (and everything under it)
Processing pyrevolve-1.0.1-py3.6-macosx-10.7-x86_64.egg
creating /Users/elena/anaconda2/envs/devito/lib/python3.6/site-packages/pyrevolve-1.0.1-py3.6-macosx-10.7-x86_64.egg
Extracting pyrevolve-1.0.1-py3.6-macosx-10.7-x86_64.egg to /Users/elena/anaconda2/envs/devito/lib/python3.6/site-packages
Adding pyrevolve 1.0.1 to easy-install.pth file

Installed /Users/elena/anaconda2/envs/devito/lib/python3.6/site-packages/pyrevolve-1.0.1-py3.6-macosx-10.7-x86_64.egg
Processing dependencies for pyrevolve==1.0.1
Finished processing dependencies for pyrevolve==1.0.1

(devito) Elenas-iMac:pyrevolve-1.0.1 elena$ python -c "import pyrevolve"
Traceback (most recent call last):
  File "/Users/elena/install/pyrevolve-1.0.1/pyrevolve/pyrevolve.py", line 2, in <module>
    import pyrevolve.crevolve as cr
ImportError: dlopen(/Users/elena/install/pyrevolve-1.0.1/pyrevolve/crevolve.cpython-36m-darwin.so, 2): Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv
  Referenced from: /Users/elena/install/pyrevolve-1.0.1/pyrevolve/crevolve.cpython-36m-darwin.so
  Expected in: /usr/lib/libstdc++.6.dylib
 in /Users/elena/install/pyrevolve-1.0.1/pyrevolve/crevolve.cpython-36m-darwin.so

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Users/elena/install/pyrevolve-1.0.1/pyrevolve/__init__.py", line 3, in <module>
    from pyrevolve.pyrevolve import * # noqa
  File "/Users/elena/install/pyrevolve-1.0.1/pyrevolve/pyrevolve.py", line 4, in <module>
    import crevolve as cr
ModuleNotFoundError: No module named 'crevolve'
@jhueckelheim
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jhueckelheim commented Nov 9, 2018 via email •
edited by navjotk
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@Elena2506
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Elena2506 commented Nov 9, 2018 via email

@jhueckelheim
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jhueckelheim commented Nov 9, 2018 via email •
edited by navjotk
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@Elena2506
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Elena2506 commented Nov 9, 2018 via email •
edited by navjotk
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@jhueckelheim
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jhueckelheim commented Nov 9, 2018 via email •
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@Elena2506
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Elena2506 commented Nov 10, 2018 via email

@navjotk
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navjotk commented Nov 12, 2018 •
edited
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Hi @Elena2506 . Isolation between the different environments is an important part of what conda offers.

Under normal circumstances, installing something in one environment should not affect things in another environment.

@navjotk
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navjotk commented Feb 27, 2019

@Elena2506 If this issue was solved for you, I would like to close it here

@Elena2506
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Elena2506 commented Feb 27, 2019 via email

@navjotk navjotk closed this as completed Feb 28, 2019
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3 participants
@navjotk @jhueckelheim @Elena2506