AttributeError: 'module' object has no attribute 'simul'

[cresnik]

Hi

I installed simrrls using egglib 3.0.0b5 as well as egglib 3.0.0b6. (tested and working according to the egglib homepage)
Running simrrls -h works but running the example usages always results in errors:

$ simrrls -o test1 -N 1e6 -n 4 -L 1000
Traceback (most recent call last):
File "/usr/local/anaconda/envs/simrrls_egglib_old/bin/simrrls", line 9, in
load_entry_point('simrrls==0.0.10', 'console_scripts', 'simrrls')()
File "/usr/local/anaconda/envs/simrrls_egglib_old/lib/python2.7/site-packages/simrrls/main.py", line 17, in main
run(params)
File "/usr/local/anaconda/envs/simrrls_egglib_old/lib/python2.7/site-packages/simrrls/simrrls.py", line 464, in run
tiptax, paramset = checkopts(params)
File "/usr/local/anaconda/envs/simrrls_egglib_old/lib/python2.7/site-packages/simrrls/simrrls.py", line 29, in checkopts
tiptax, paramset = defaulttree(params)
File "/usr/local/anaconda/envs/simrrls_egglib_old/lib/python2.7/site-packages/simrrls/simrrls.py", line 87, in defaulttree
paramset = egglib.simul.CoalesceParamSet(
AttributeError: 'module' object has no attribute 'simul'

Is this an actual error in the code or am I missing some files? I followed the installation steps outlined on the github page... the simrrls is installed an anaconda test environment.

Additional infos/versions:

$ python --version
Python 2.7.11 :: Continuum Analytics, Inc.

$ simrrls --version
simrrls 0.0.10

import egglib
print egglib.version
3.0.0b6

Does anybody else have this problem? Thanks for any hints....

[dereneaton]

It looks like the syntax changed for egglib v.3, which is super new and still apparently in beta testing. Sorry, I know egglib is a pain to install, but you'll have to go back to egglib v2 for simrrls to work.

[cresnik]

Hi
Thanks for the reply.
I re-installed simrrls using egglib 2.1.11 and it works now.

[ClaudiaPaetzold]

Hi,
I have run into the same problem.

When I call simrrls I get the following error message:
$ simrrls
Traceback (most recent call last):
File "/Users/ClaudiaPaetzold/anaconda2/bin/simrrls", line 9, in
load_entry_point('simrrls==0.0.10', 'console_scripts', 'simrrls')()
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/main.py", line 17, in main
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/simrrls.py", line 464, in run
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/simrrls.py", line 29, in checkopts
File "build/bdist.macosx-10.5-x86_64/egg/simrrls/simrrls.py", line 87, in defaulttree
AttributeError: 'module' object has no attribute 'simul'

However, I have installed eggless v2.1.11.
Any hints?

P.S. python v 2.7
numpy v1.11.0

Thank You

[cresnik]

Hi Claudia

Not quite sure what could be wrong.
I've heard that Mac OS X comes with a slightly different python version
compared to linux.
I don't have a Mac OS X 10.5 installation around somewhere, thus I can't
really check this myself.

Please find below my installation notes. Maybe you can find out what is
different compared to your setup or your installation...

notes:

1. the prefix during the egglib installation is because I didn't want to
   overwrite the system defaults
2. just "pip install ." in the simrrls folder didn't work for me, I had
   to use "pip install --upgrade ."
3. After creating the anaconda environment, the environment has to be
   initiated and all subsequent setup steps need to be executed within that
   environment

HTH
Chris

---

cd /usr/local/anaconda/bin

conda create -n simrrls python=2.7 numpy pip

--> installs the following dependencies:

 mkl:        11.3.1-0
 numpy:      1.11.0-py27_0
 openssl:    1.0.2g-0
 pip:        8.1.1-py27_1
 python:     2.7.11-0
 readline:   6.2-2
 setuptools: 20.7.0-py27_0
 sqlite:     3.9.2-0
 tk:         8.5.18-0
 wheel:      0.29.0-py27_0
 zlib:       1.2.8-0

To activate this environment, use:

$ source activate simrrls

To deactivate this environment, use:

$ source deactivate

""""""""""""""""""""""""""""""""""""""""

source /usr/local/anaconda/bin/activate simrrls

cd /usr/local/build

==== egglib v2.1.11 =====

see http://mycor.nancy.inra.fr/egglib/releases/2.1.11/egglib.pdf for
installation

mkdir /usr/local/egglib-2.1.11

wget

http://mycor.nancy.inra.fr/egglib/releases/2.1.11/egglib-cpp-2.1.11.tar.gz

wget

http://mycor.nancy.inra.fr/egglib/releases/2.1.11/egglib-py-2.1.11.tar.gz

tar zxvf egglib-cpp-2.1.11.tar.gz

tar zxvf egglib-py-2.1.11.tar.gz

cd egglib-cpp-2.1.11

./configure --prefix=/usr/local/egglib-2.1.11

make

make install

cd ..

cd egglib-py-2.1.11

python setup.py build --prefix=/usr/local/egglib-2.1.11

python setup.py install --prefix=/usr/local/egglib-2.1.11

==== simrrls ====

cd ..

git clone https://github.com/dereneaton/simrrls.git

cd simrrls

pip install --upgrade .

---