Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Cut sequence does not actually overwrite defaults #1

Closed
jpuritz opened this issue Jul 16, 2015 · 2 comments
Closed

Cut sequence does not actually overwrite defaults #1

jpuritz opened this issue Jul 16, 2015 · 2 comments

Comments

@jpuritz
Copy link

jpuritz commented Jul 16, 2015

Using the -c1 or -c2 option has no effect on output.
@dereneaton
Copy link
Owner

Thanks for finding this. It is now fixed. The cutter args are now merged into a single arg. You can use -c TGCAG,AATTC (comma separated, no space) to list two cutters for double digest. If your library type is single digest (e.g., RAD) the second cutter if present is ignored.

@jpuritz
Copy link
Author

jpuritz commented Jul 16, 2015

Happy to help. This script is very useful!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@jpuritz @dereneaton