From 9fa735a290c6f065bea6ef80119f6192bcd73a06 Mon Sep 17 00:00:00 2001
From: Isaac Overcast <isaac.overcast@gmail.com>
Date: Wed, 11 Dec 2024 09:26:43 -0500
Subject: [PATCH] Update 6-params.rst

---
 newdocs/6-params.rst | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/newdocs/6-params.rst b/newdocs/6-params.rst
index 0beb6aa2..77a5ed8b 100644
--- a/newdocs/6-params.rst
+++ b/newdocs/6-params.rst
@@ -595,7 +595,8 @@ Affected steps = 7. Example entries to params.txt
 
 23. max_Indels_locus
 ---------------------
-The maximum number of Indels allowed in a final locus. This helps to filter
+The maximum number of internal indels allowed in a final locus (terminal 5'/3' indels
+are not counted for the purpose of this filter). This helps to filter
 out poor final alignments, particularly for paired-end data.
 The default is 8.