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AttributeError: module 'cooler' has no attribute 'fileops' while converting cool to h5 #922

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Shubhra1994 opened this issue Jan 24, 2025 · 0 comments

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@Shubhra1994
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Hello, I am trying to convert cool to h5 format using hicConvertFormat. I have an mcool file from which I have already extracted my resolution using

cooler dump --join ../test.iced.mcool::resolutions/10000 -o test.cool

and then I run -

hicConvertFormat \
  -m test.cool \
    --outFileName test.h5 \
   --inputFormat cool \
   --outputFormat h5

I get the error: AttributeError: module 'cooler' has no attribute 'fileops'

If I try using mcool directly for conversion using -

hicConvertFormat \
    -m test.iced.mcool::resolutions/10000 \
    --outFileName test.h5 \
   --inputFormat cool \
   --outputFormat h5

Same issue pops up.
Any help would be appreciated. Thanks.

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