AttributeError: module 'deepchem.molnet' has no attribute 'run_benchmark' when running benchmarks

[hughEvansOne]

🐛 Bug

When running either examples/benchmark.py or examples/benchmark_curve.py benchmark fails with error AttributeError: module 'deepchem.molnet' has no attribute 'run_benchmark'

To Reproduce

python3 -m pip install deepchem && python3 deepchem/examples/benchmark.py

(.venv) ubuntu@artemis-0:~$ python3 hugh/repos/deepchemRepo/examples/benchmark.py
No normalization for SPS. Feature removed!
No normalization for AvgIpc. Feature removed!
No normalization for NumAmideBonds. Feature removed!
No normalization for NumAtomStereoCenters. Feature removed!
No normalization for NumBridgeheadAtoms. Feature removed!
No normalization for NumHeterocycles. Feature removed!
No normalization for NumSpiroAtoms. Feature removed!
No normalization for NumUnspecifiedAtomStereoCenters. Feature removed!
No normalization for Phi. Feature removed!
2025-01-07 15:14:09.080809: I tensorflow/core/util/port.cc:153] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2025-01-07 15:14:09.101456: E external/local_xla/xla/stream_executor/cuda/cuda_fft.cc:477] Unable to register cuFFT factory: Attempting to register factory for plugin cuFFT when one has already been registered
WARNING: All log messages before absl::InitializeLog() is called are written to STDERR
E0000 00:00:1736262849.126541  475141 cuda_dnn.cc:8310] Unable to register cuDNN factory: Attempting to register factory for plugin cuDNN when one has already been registered
E0000 00:00:1736262849.133673  475141 cuda_blas.cc:1418] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered
2025-01-07 15:14:09.158408: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI AVX512_BF16 AVX512_FP16 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
WARNING:tensorflow:From /home/ubuntu/.venv/lib/python3.10/site-packages/tensorflow/python/util/deprecation.py:588: calling function (from tensorflow.python.eager.polymorphic_function.polymorphic_function) with experimental_relax_shapes is deprecated and will be removed in a future version.
Instructions for updating:
experimental_relax_shapes is deprecated, use reduce_retracing instead
Skipped loading modules with pytorch-geometric dependency, missing a dependency. No module named 'torchdata.datapipes'
Traceback (most recent call last):
  File "/home/ubuntu/hugh/repos/deepchemRepo/examples/benchmark.py", line 109, in <module>
    dc.molnet.run_benchmark(
AttributeError: module 'deepchem.molnet' has no attribute 'run_benchmark'

Expected behavior

Benchmark completes and returns results.

Environment

• OS: Linux
• Python version: 3.11
• DeepChem version: 2.8.0
• RDKit version (optional):
• TensorFlow version (optional):
• PyTorch version (optional):
• Any other relevant information: