diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md index 684cf81..0502528 100644 --- a/CODE_OF_CONDUCT.md +++ b/CODE_OF_CONDUCT.md @@ -1,4 +1,3 @@ - # Contributor Covenant Code of Conduct ## Our Pledge diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index f07cecb..e04d170 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,3 +1,5 @@ # Contribution Guidelines -This project follows the [DataJoint Contribution Guidelines](https://docs.datajoint.io/python/community/02-Contribute.html). Please reference the link for more full details. \ No newline at end of file +This project follows the +[DataJoint Contribution Guidelines](https://datajoint.com/docs/community/contribute/). +Please reference the link for more full details. diff --git a/README.md b/README.md index d7ab21b..86393d6 100644 --- a/README.md +++ b/README.md @@ -16,15 +16,17 @@ A complete calcium imaging workflow can be built using the DataJoint Elements. This repository provides demonstrations for: 1. Set up a workflow using DataJoint Elements (see -[workflow_calcium_imaging/pipeline.py](workflow_calcium_imaging/pipeline.py)) + [workflow_calcium_imaging/pipeline.py](workflow_calcium_imaging/pipeline.py)) 2. Ingestion of data/metadata based on a predefined file structure, file naming -convention, and directory lookup methods (see -[workflow_calcium_imaging/paths.py](workflow_calcium_imaging/paths.py)). + convention, and directory lookup methods (see + [workflow_calcium_imaging/paths.py](workflow_calcium_imaging/paths.py)). 3. Ingestion of segmentation and deconvolution results. See the [Element Calcium Imaging documentation](https://elements.datajoint.org/description/calcium_imaging/) for the background information and development timeline. -For more information on the DataJoint Elements project, please visit . This work is supported by the National Institutes of Health. +For more information on the DataJoint Elements project, please visit +. This work is supported by the National Institutes of +Health. ## Workflow architecture @@ -40,14 +42,14 @@ assembled together to form a fully functional workflow. ## Installation instructions + The installation instructions can be found at the -[DataJoint Elements documentation](https://elements.datajoint.org/usage/install/). + [DataJoint Elements documentation](https://elements.datajoint.org/usage/install/). ## Interacting with the DataJoint workflow -+ Please refer to the following workflow-specific -[Jupyter notebooks](/notebooks) for an in-depth explanation of how to run the -workflow ([03-process.ipynb](notebooks/03-process.ipynb)) and explore the data -([05-explore.ipynb](notebooks/05-explore.ipynb)). ++ Please refer to the following workflow-specific [Jupyter notebooks](/notebooks) for an + in-depth explanation of how to run the workflow + ([03-process.ipynb](notebooks/03-process.ipynb)) and explore the data + ([05-explore.ipynb](notebooks/05-explore.ipynb)). + See our YouTube tutorial for a walkthrough of the schemas and functions: