From c92d25f8fea0e442d15bb4ebddeeb544ee6a0dd3 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 12 Dec 2023 00:19:17 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : ab790e327800b92019667c755d688e0215993a12
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-10-02 17:18:34 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 4dbef539f4e3c10279ae938e191840b998ef5fdd
Branch  : main
Author  : Travis Wrightsman <tw493@cornell.edu>
Time    : 2023-10-02 17:17:05 +0000
Message : Merge pull request #151 from rosemm/fix_links

Correct link to AMI-setup page
---
 404.html                         | 4 ++--
 AMI-setup.html                   | 6 +++---
 CODE_OF_CONDUCT.html             | 2 +-
 LICENSE.html                     | 2 +-
 faq.html                         | 2 +-
 index.html                       | 4 ++--
 instructor-notes.html            | 4 ++--
 instructor/404.html              | 4 ++--
 instructor/AMI-setup.html        | 6 +++---
 instructor/CODE_OF_CONDUCT.html  | 2 +-
 instructor/LICENSE.html          | 2 +-
 instructor/faq.html              | 2 +-
 instructor/index.html            | 4 ++--
 instructor/instructor-notes.html | 4 ++--
 instructor/profiles.html         | 4 ++--
 instructor/reference.html        | 2 +-
 instructor/teaching_demos.html   | 2 +-
 pkgdown.yml                      | 2 +-
 profiles.html                    | 4 ++--
 reference.html                   | 2 +-
 teaching_demos.html              | 2 +-
 21 files changed, 33 insertions(+), 33 deletions(-)

diff --git a/404.html b/404.html
index 6642403b..0925ad9f 100644
--- a/404.html
+++ b/404.html
@@ -218,8 +218,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/AMI-setup.html b/AMI-setup.html
index 2e2e7bc8..72a3faff 100644
--- a/AMI-setup.html
+++ b/AMI-setup.html
@@ -277,7 +277,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Connect to your Amazon Instance (MacOS/Linux)
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
 <li><p>You should see that you have one instance. To proceed, the
@@ -334,7 +334,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Connect to your Amazon instance (Windows)
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Download the PuTTY application at: <a href="https://the.earth.li/~sgtatham/putty/latest/x86/putty.exe" class="external-link">http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe</a></p></li>
 <li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
@@ -476,7 +476,7 @@ <h3 class="callout-title">Warning<a class="anchor" aria-label="anchor" href="#wa
   "identifier": "https://datacarpentry.github.io/genomics-workshop/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 854716f8..752a756c 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -245,7 +245,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 58919a00..fdcdcf55 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -297,7 +297,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/faq.html b/faq.html
index 987f2d24..5fa5a234 100644
--- a/faq.html
+++ b/faq.html
@@ -419,7 +419,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 5aa702cf..e209f880 100644
--- a/index.html
+++ b/index.html
@@ -1004,8 +1004,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 7f0ca1ef..c799d606 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -245,8 +245,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 682185f3..76deadb8 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -212,8 +212,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/AMI-setup.html b/instructor/AMI-setup.html
index 3488bc67..003c9548 100644
--- a/instructor/AMI-setup.html
+++ b/instructor/AMI-setup.html
@@ -273,7 +273,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Connect to your Amazon Instance (MacOS/Linux)
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
 <li><p>You should see that you have one instance. To proceed, the
@@ -330,7 +330,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Connect to your Amazon instance (Windows)
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Download the PuTTY application at: <a href="https://the.earth.li/~sgtatham/putty/latest/x86/putty.exe" class="external-link">http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe</a></p></li>
 <li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
@@ -472,7 +472,7 @@ <h3 class="callout-title">Warning<a class="anchor" aria-label="anchor" href="#wa
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 860da425..be2c6d8e 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -241,7 +241,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index f5523d47..17e9a8e3 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -293,7 +293,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/faq.html b/instructor/faq.html
index e0c41329..11e9d664 100644
--- a/instructor/faq.html
+++ b/instructor/faq.html
@@ -415,7 +415,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 22af3c4d..a6df028f 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -1003,8 +1003,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 0cf74b1a..9cbc4225 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -239,8 +239,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 9a5edf68..cd524677 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -199,8 +199,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index e2efbb8f..3c5ed673 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -234,7 +234,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/reference.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/teaching_demos.html b/instructor/teaching_demos.html
index 2a1d47d8..c36cfab5 100644
--- a/instructor/teaching_demos.html
+++ b/instructor/teaching_demos.html
@@ -289,7 +289,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/teaching_demos.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-10-02",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 7adef19d..96d25447 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2023-12-05T00:17Z
+last_built: 2023-12-12T00:19Z
 
diff --git a/profiles.html b/profiles.html
index ccba5e8a..613ceb0e 100644
--- a/profiles.html
+++ b/profiles.html
@@ -205,8 +205,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 19132150..238069a1 100644
--- a/reference.html
+++ b/reference.html
@@ -238,7 +238,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/reference.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/teaching_demos.html b/teaching_demos.html
index d9dde22e..8095e689 100644
--- a/teaching_demos.html
+++ b/teaching_demos.html
@@ -293,7 +293,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
   "identifier": "https://datacarpentry.github.io/genomics-workshop/teaching_demos.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-10-02",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>