diff --git a/404.html b/404.html
index 0229eb26..c5d93be4 100644
--- a/404.html
+++ b/404.html
@@ -217,8 +217,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/AMI-setup.html b/AMI-setup.html
index 898d95aa..705f3bba 100644
--- a/AMI-setup.html
+++ b/AMI-setup.html
@@ -275,7 +275,7 @@ <h4 id="sign-into-aws-and-launch-an-instance">Sign into AWS and Launch an Instan
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Connect to your Amazon Instance (MacOS/Linux)</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
 <li><p>You should see that you have one instance. To proceed, the
@@ -330,7 +330,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Connect to your Amazon instance (Windows)</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Download the PuTTY application at: <a href="https://the.earth.li/~sgtatham/putty/latest/x86/putty.exe" class="external-link">http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe</a></p></li>
 <li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
@@ -471,7 +471,7 @@ <h3 class="callout-title">Warning<a class="anchor" aria-label="anchor" href="#wa
   "identifier": "https://datacarpentry.github.io/genomics-workshop/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index f88ec9ae..16a28bd7 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -244,7 +244,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index f9f12d22..20dff8fe 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -296,7 +296,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/faq.html b/faq.html
index c6020d9b..21a9cf2c 100644
--- a/faq.html
+++ b/faq.html
@@ -418,7 +418,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2024-01-08",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index c94f0c3e..dccb37fc 100644
--- a/index.html
+++ b/index.html
@@ -341,7 +341,7 @@ <h2 id="required-additional-software">Required additional software<a class="anch
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Windows</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Windows should
@@ -419,7 +419,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Mac OS X</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Mac should
@@ -439,7 +439,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   <h3 class="accordion-header" id="headingSpoiler3">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Linux</h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Linux should
@@ -557,7 +557,7 @@ <h3 id="conda">Conda<a class="anchor" aria-label="anchor" href="#conda"></a></h3
   <h3 class="accordion-header" id="headingSpoiler4">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Linux</h3>
 </button>
-<div id="collapseSpoiler4" class="accordion-collapse collapse" aria-labelledby="headingSpoiler4" data-bs-parent="#accordionSpoiler4">
+<div id="collapseSpoiler4" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler4" aria-labelledby="headingSpoiler4">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb1">
@@ -578,7 +578,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler5">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler5" class="accordion-collapse collapse" aria-labelledby="headingSpoiler5" data-bs-parent="#accordionSpoiler5">
+<div id="collapseSpoiler5" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler5" aria-labelledby="headingSpoiler5">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb2">
@@ -602,7 +602,7 @@ <h3 id="fastqc">FastQC<a class="anchor" aria-label="anchor" href="#fastqc"></a><
   <h3 class="accordion-header" id="headingSpoiler6">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler6" class="accordion-collapse collapse" aria-labelledby="headingSpoiler6" data-bs-parent="#accordionSpoiler6">
+<div id="collapseSpoiler6" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler6" aria-labelledby="headingSpoiler6">
 <div class="accordion-body">
 <p>To install FastQC, type:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -620,7 +620,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler7">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>FastQC Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler7" class="accordion-collapse collapse" aria-labelledby="headingSpoiler7" data-bs-parent="#accordionSpoiler7">
+<div id="collapseSpoiler7" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler7" aria-labelledby="headingSpoiler7">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -664,7 +664,7 @@ <h3 id="trimmomatic">Trimmomatic<a class="anchor" aria-label="anchor" href="#tri
   <h3 class="accordion-header" id="headingSpoiler8">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler8" class="accordion-collapse collapse" aria-labelledby="headingSpoiler8" data-bs-parent="#accordionSpoiler8">
+<div id="collapseSpoiler8" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler8" aria-labelledby="headingSpoiler8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -681,7 +681,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler9">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Trimmomatic Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler9" class="accordion-collapse collapse" aria-labelledby="headingSpoiler9" data-bs-parent="#accordionSpoiler9">
+<div id="collapseSpoiler9" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler9" aria-labelledby="headingSpoiler9">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -718,7 +718,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler10">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Simplify the Invocation, or to Test your installation if you installed with miniconda3:</h3>
 </button>
-<div id="collapseSpoiler10" class="accordion-collapse collapse" aria-labelledby="headingSpoiler10" data-bs-parent="#accordionSpoiler10">
+<div id="collapseSpoiler10" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler10" aria-labelledby="headingSpoiler10">
 <div class="accordion-body">
 <p>To simplify the invocation you could also create a script in the
 ~/bin folder:</p>
@@ -748,7 +748,7 @@ <h3 id="bwa">BWA<a class="anchor" aria-label="anchor" href="#bwa"></a></h3>
   <h3 class="accordion-header" id="headingSpoiler11">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler11" class="accordion-collapse collapse" aria-labelledby="headingSpoiler11" data-bs-parent="#accordionSpoiler11">
+<div id="collapseSpoiler11" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler11" aria-labelledby="headingSpoiler11">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb15">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -765,7 +765,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler12">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>BWA Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler12" class="accordion-collapse collapse" aria-labelledby="headingSpoiler12" data-bs-parent="#accordionSpoiler12">
+<div id="collapseSpoiler12" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler12" aria-labelledby="headingSpoiler12">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -798,7 +798,7 @@ <h3 id="samtools">SAMtools<a class="anchor" aria-label="anchor" href="#samtools"
   <h3 class="accordion-header" id="headingSpoiler13">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler13" class="accordion-collapse collapse" aria-labelledby="headingSpoiler13" data-bs-parent="#accordionSpoiler13">
+<div id="collapseSpoiler13" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler13" aria-labelledby="headingSpoiler13">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb18">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -831,7 +831,7 @@ <h3 class="callout-title">SAMtools Versions<a class="anchor" aria-label="anchor"
   <h3 class="accordion-header" id="headingSpoiler14">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>SAMtools Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler14" class="accordion-collapse collapse" aria-labelledby="headingSpoiler14" data-bs-parent="#accordionSpoiler14">
+<div id="collapseSpoiler14" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler14" aria-labelledby="headingSpoiler14">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -870,7 +870,7 @@ <h3 id="bcftools">BCFtools<a class="anchor" aria-label="anchor" href="#bcftools"
   <h3 class="accordion-header" id="headingSpoiler15">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler15" class="accordion-collapse collapse" aria-labelledby="headingSpoiler15" data-bs-parent="#accordionSpoiler15">
+<div id="collapseSpoiler15" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler15" aria-labelledby="headingSpoiler15">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb22">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -887,7 +887,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler16">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>BCF tools Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler16" class="accordion-collapse collapse" aria-labelledby="headingSpoiler16" data-bs-parent="#accordionSpoiler16">
+<div id="collapseSpoiler16" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler16" aria-labelledby="headingSpoiler16">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -971,8 +971,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index 7bf8c0fb..98f27f6e 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -244,8 +244,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index 7a17b0a1..a86b3dac 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -211,8 +211,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/404.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/AMI-setup.html b/instructor/AMI-setup.html
index 7494925c..7d46e35c 100644
--- a/instructor/AMI-setup.html
+++ b/instructor/AMI-setup.html
@@ -271,7 +271,7 @@ <h4 id="sign-into-aws-and-launch-an-instance">Sign into AWS and Launch an Instan
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Connect to your Amazon Instance (MacOS/Linux)</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
 <li><p>You should see that you have one instance. To proceed, the
@@ -326,7 +326,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Connect to your Amazon instance (Windows)</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><p>Download the PuTTY application at: <a href="https://the.earth.li/~sgtatham/putty/latest/x86/putty.exe" class="external-link">http://the.earth.li/~sgtatham/putty/latest/x86/putty.exe</a></p></li>
 <li><p>Log into your AWC EC2 Dashboard <a href="https://console.aws.amazon.com/ec2/" class="external-link">https://console.aws.amazon.com/ec2/</a></p></li>
@@ -467,7 +467,7 @@ <h3 class="callout-title">Warning<a class="anchor" aria-label="anchor" href="#wa
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/AMI-setup.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 5d7756d0..6a6de508 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -240,7 +240,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 7b99a9cb..b57ae4b9 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -292,7 +292,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/LICENSE.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/faq.html b/instructor/faq.html
index 510c3d1d..9d3bfbc9 100644
--- a/instructor/faq.html
+++ b/instructor/faq.html
@@ -414,7 +414,7 @@ <h3 id="does-the-aws-image-location-matter-do-i-need-to-set-up-an-ami-in-a-diffe
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/faq.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2024-01-08",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 856bc08d..a6d11fee 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -340,7 +340,7 @@ <h2 id="required-additional-software">Required additional software<a class="anch
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Windows</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Windows should
@@ -418,7 +418,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Mac OS X</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Mac should
@@ -438,7 +438,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   <h3 class="accordion-header" id="headingSpoiler3">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Linux</h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
 <div class="accordion-body">
 <ul><li>Visit <a href="https://www.libreoffice.org/download/libreoffice-fresh/" class="external-link">the
 LibreOffice installation page</a>. The version for Linux should
@@ -556,7 +556,7 @@ <h3 id="conda">Conda<a class="anchor" aria-label="anchor" href="#conda"></a></h3
   <h3 class="accordion-header" id="headingSpoiler4">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Linux</h3>
 </button>
-<div id="collapseSpoiler4" class="accordion-collapse collapse" aria-labelledby="headingSpoiler4" data-bs-parent="#accordionSpoiler4">
+<div id="collapseSpoiler4" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler4" aria-labelledby="headingSpoiler4">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb1">
@@ -577,7 +577,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler5">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler5" class="accordion-collapse collapse" aria-labelledby="headingSpoiler5" data-bs-parent="#accordionSpoiler5">
+<div id="collapseSpoiler5" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler5" aria-labelledby="headingSpoiler5">
 <div class="accordion-body">
 <p>To install Conda, type:</p>
 <div class="codewrapper sourceCode" id="cb2">
@@ -601,7 +601,7 @@ <h3 id="fastqc">FastQC<a class="anchor" aria-label="anchor" href="#fastqc"></a><
   <h3 class="accordion-header" id="headingSpoiler6">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler6" class="accordion-collapse collapse" aria-labelledby="headingSpoiler6" data-bs-parent="#accordionSpoiler6">
+<div id="collapseSpoiler6" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler6" aria-labelledby="headingSpoiler6">
 <div class="accordion-body">
 <p>To install FastQC, type:</p>
 <div class="codewrapper sourceCode" id="cb3">
@@ -619,7 +619,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler7">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>FastQC Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler7" class="accordion-collapse collapse" aria-labelledby="headingSpoiler7" data-bs-parent="#accordionSpoiler7">
+<div id="collapseSpoiler7" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler7" aria-labelledby="headingSpoiler7">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -663,7 +663,7 @@ <h3 id="trimmomatic">Trimmomatic<a class="anchor" aria-label="anchor" href="#tri
   <h3 class="accordion-header" id="headingSpoiler8">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler8" class="accordion-collapse collapse" aria-labelledby="headingSpoiler8" data-bs-parent="#accordionSpoiler8">
+<div id="collapseSpoiler8" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler8" aria-labelledby="headingSpoiler8">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb8">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -680,7 +680,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler9">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Trimmomatic Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler9" class="accordion-collapse collapse" aria-labelledby="headingSpoiler9" data-bs-parent="#accordionSpoiler9">
+<div id="collapseSpoiler9" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler9" aria-labelledby="headingSpoiler9">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the directions
 below:</p>
@@ -717,7 +717,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler10">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>Simplify the Invocation, or to Test your installation if you installed with miniconda3:</h3>
 </button>
-<div id="collapseSpoiler10" class="accordion-collapse collapse" aria-labelledby="headingSpoiler10" data-bs-parent="#accordionSpoiler10">
+<div id="collapseSpoiler10" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler10" aria-labelledby="headingSpoiler10">
 <div class="accordion-body">
 <p>To simplify the invocation you could also create a script in the
 ~/bin folder:</p>
@@ -747,7 +747,7 @@ <h3 id="bwa">BWA<a class="anchor" aria-label="anchor" href="#bwa"></a></h3>
   <h3 class="accordion-header" id="headingSpoiler11">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler11" class="accordion-collapse collapse" aria-labelledby="headingSpoiler11" data-bs-parent="#accordionSpoiler11">
+<div id="collapseSpoiler11" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler11" aria-labelledby="headingSpoiler11">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb15">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -764,7 +764,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler12">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>BWA Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler12" class="accordion-collapse collapse" aria-labelledby="headingSpoiler12" data-bs-parent="#accordionSpoiler12">
+<div id="collapseSpoiler12" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler12" aria-labelledby="headingSpoiler12">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -797,7 +797,7 @@ <h3 id="samtools">SAMtools<a class="anchor" aria-label="anchor" href="#samtools"
   <h3 class="accordion-header" id="headingSpoiler13">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler13" class="accordion-collapse collapse" aria-labelledby="headingSpoiler13" data-bs-parent="#accordionSpoiler13">
+<div id="collapseSpoiler13" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler13" aria-labelledby="headingSpoiler13">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb18">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -830,7 +830,7 @@ <h3 class="callout-title">SAMtools Versions<a class="anchor" aria-label="anchor"
   <h3 class="accordion-header" id="headingSpoiler14">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>SAMtools Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler14" class="accordion-collapse collapse" aria-labelledby="headingSpoiler14" data-bs-parent="#accordionSpoiler14">
+<div id="collapseSpoiler14" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler14" aria-labelledby="headingSpoiler14">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -869,7 +869,7 @@ <h3 id="bcftools">BCFtools<a class="anchor" aria-label="anchor" href="#bcftools"
   <h3 class="accordion-header" id="headingSpoiler15">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>MacOS</h3>
 </button>
-<div id="collapseSpoiler15" class="accordion-collapse collapse" aria-labelledby="headingSpoiler15" data-bs-parent="#accordionSpoiler15">
+<div id="collapseSpoiler15" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler15" aria-labelledby="headingSpoiler15">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb22">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -886,7 +886,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler16">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>BCF tools Source Code Installation</h3>
 </button>
-<div id="collapseSpoiler16" class="accordion-collapse collapse" aria-labelledby="headingSpoiler16" data-bs-parent="#accordionSpoiler16">
+<div id="collapseSpoiler16" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler16" aria-labelledby="headingSpoiler16">
 <div class="accordion-body">
 <p>If you prefer to install from source, follow the instructions
 below:</p>
@@ -970,8 +970,8 @@ <h3 id="igv">IGV<a class="anchor" aria-label="anchor" href="#igv"></a></h3>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/index.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 7e54c6e0..0f30ac30 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -238,8 +238,8 @@ <h4 id="installation">Installation<a class="anchor" aria-label="anchor" href="#i
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/instructor-notes.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index 405057e6..dbc98e78 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -198,8 +198,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index 550db0b9..6d661986 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -233,7 +233,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/reference.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/instructor/teaching_demos.html b/instructor/teaching_demos.html
index 558bb7d0..2d3ee878 100644
--- a/instructor/teaching_demos.html
+++ b/instructor/teaching_demos.html
@@ -288,7 +288,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
   "identifier": "https://datacarpentry.github.io/genomics-workshop/instructor/teaching_demos.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-10-02",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index edb1abc9..78de48ba 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-01-16T00:17Z
+last_built: 2024-01-23T00:17Z
 
diff --git a/profiles.html b/profiles.html
index d359e9de..a296f7b3 100644
--- a/profiles.html
+++ b/profiles.html
@@ -204,8 +204,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-workshop/profiles.html",
   "dateCreated": "2015-06-03",
-  "dateModified": "2024-01-16",
-  "datePublished": "2024-01-16"
+  "dateModified": "2024-01-23",
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index ad8e05b4..d3e21ba4 100644
--- a/reference.html
+++ b/reference.html
@@ -237,7 +237,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-workshop/reference.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-09-19",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>
diff --git a/teaching_demos.html b/teaching_demos.html
index f4198355..26197de2 100644
--- a/teaching_demos.html
+++ b/teaching_demos.html
@@ -292,7 +292,7 @@ <h4 id="data-analysis-and-visualization-in-r"><a href="https://datacarpentry.org
   "identifier": "https://datacarpentry.github.io/genomics-workshop/teaching_demos.html",
   "dateCreated": "2015-06-03",
   "dateModified": "2023-10-02",
-  "datePublished": "2024-01-16"
+  "datePublished": "2024-01-23"
 }
 
   </script><script>